Orcinus orca (killer whale): 101272994
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Entry
101272994 CDS
T05247
Symbol
EFTUD2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
oor
Orcinus orca (killer whale)
Pathway
oor03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oor00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101272994 (EFTUD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oor03041
]
101272994 (EFTUD2)
Spliceosome [BR:
oor03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
101272994 (EFTUD2)
Complex C
U5 SnRNP specific factors
101272994 (EFTUD2)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
101272994
NCBI-ProteinID:
XP_004286013
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All DBs
Position
19:38989061..39022006
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AA seq
972 aa
AA seq
DB search
MDTDLYDEFGNYIGPELDSDEDDDELGRETKDLDEVDDDDDDDELGDHDEDHPGMEVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL
SPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKFTKKA
PTSSSQRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVC
KKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTK
MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
VNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLC
DELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVVLNYPM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggatactgacttgtatgatgagtttgggaattatattggaccagagcttgattctgat
gaagatgatgatgaattgggcagagagaccaaagatcttgatgaggtcgatgatgatgat
gatgacgacgagctgggagatcatgatgaagaccaccctggcatggaggtggtgctgcat
gaggacaagaagtactaccccacagctgaggaggtatatggtcctgaagtggagaccata
gttcaggaggaggacacccagcctctcacagaacccattattaaaccggtgaaaaccaag
aaattcactctgatggagcagacattacctgtcacggtatatgaaatggatttcttggca
gacctgatggataactcggagctgatcagaaatgtgaccctttgtggtcatctccaccat
ggcaagacatgttttgtagattgtttaatagagcagactcacccggaaatcagaaagcgc
tacgaccaagatctgtgctacactgacatcctcttcacagagcaagagaggggtgttggc
atcaagagtactcctgtgacagtagtcttgccagataccaaaggaaaatcctacctcttc
aatatcatggacactccaggacacgtgaatttttctgacgaggtcacagctggcttgcgc
atctcagatggagtggtccttttcatcgatgctgctgagggcgtgatgctgaacacagag
cggctgatcaagcacgccgtgcaggagaggctggcggtcaccgtgtgcatcaacaagatt
gaccggctgatcctggagctgaagctgccccccactgatgcttattacaagctgcgtcac
attgtagatgaggtcaacggactaataagcatgtattccactgacgagaacctaatcctt
tccccgctcctgggcaacgtctgcttctccagctcccagtacagcatctgcttcacactg
ggctcctttgccaagatctacgctgacacctttggtgacattaactaccaggaatttgct
aaaagactctggggtgacatctacttcaaccccaagacgcgaaagttcaccaaaaaggcc
ccaaccagcagctcccagaggagcttcgtggagtttatcttggagcccctctataagatc
ctcgctcaggtcgtgggtgatgtggacaccagcctcccgaggaccctggatgagcttggc
atccacctgaccaaggaggagctgaagctgaacatccgccccctgctcaggctggtctgc
aaaaaattctttggcgagttcacaggctttgtggacatgtgtgtgcagcatatcccctct
ccaaaggtgggcgccaagcccaagatcgagcacacctacaccggaggtgtggattccgac
ctcggggaggccatgagcgactgtgaccctgatggtcccctgatgtgccacactaccaag
atgtacagcacagacgatggggttcagtttcatgccttcggccgggtgctaagtggcacc
atccatgctgggcagcctgtgaaggtcctgggagagaactacaccctggaggatgaggaa
gactcccagatatgcaccgtgggccgcctttggatctccgtggccaggtaccacatcgaa
gtgaaccgtgttcctgctggcaactgggttctgattgaaggtgtcgatcaaccaattgtg
aagaccgcgaccataactgaaccccgaggcaatgaggaggctcagattttccggcccttg
aagttcaacaccacatctgttatcaagattgctgtggagccggtcaacccctctgagctg
cccaagatgctggacggcctccgcaaggtcaacaagagctatccgtccctcaccaccaag
gtggaagaatctggtgagcacgtgatcctgggtactggggagctctacctggactgtgtg
atgcacgatttgcggaagatgtactcggagatagacatcaaggtggctgaccccgttgtc
acgttttgtgagacggtcgtggaaacatcctccctcaagtgctttgctgaaactcccaat
aagaagaacaagatcaccatgattgccgagcctcttgagaaggggctcgctgaggacata
gagaacgaggtggtccagatcacgtggaacaggaagaagctgggagagttcttccagacc
aagtacgattgggatctgctggctgcccgttccatctgggctttcggccccgatgccacc
ggccccaacatcctggtggatgataccctgccctctgaggtggacaaggctcttctcggc
tcggtgaaggacagcatcgttcaaggtttccagtggggaaccagggaggggcccctctgt
gatgagttgattcgaaatgtcaagtttaagatcctggatgcagtcgttgcccaggagccc
ctgcaccggggcgggggccaaatcatccccacggccagaagagttgtctactctgccttc
ctcatggccacccctcgtctgatggagccctactacttcgtagaggtccaggcccccgca
gattgtgtttctgctgtttatactgtcctggccaggcgcagggggcatgtgactcaggat
gcacccatcccaggctcccctctctacaccatcaaagctttcatccccgccatcgactct
tttggctttgagaccgatctgcggactcacacgcaggggcaggccttttccttgtctgtc
ttccaccattggcagattgtacccggtgatcctctggacaagagcattgtcatccgtccc
ttggagccgcagccagcgccccacctggcccgagaattcatgatcaaaacccgtcgtagg
aagggcctgagtgaagacgtcagcatcagcaagttcttcgatgatcctatgttgctggag
ctcgccaagcaggatgttgtgctcaattaccccatgtga
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