KEGG   Orcinus orca (killer whale): 101273482
Entry
101273482         CDS       T05247                                 
Name
(RefSeq) DNA dC->dU-editing enzyme APOBEC-3B-like isoform X3
  KO
K18750  C->U-editing enzyme APOBEC3 [EC:3.5.4.-]
Organism
oor  Orcinus orca (killer whale)
Pathway
oor03250  Viral life cycle - HIV-1
oor05170  Human immunodeficiency virus 1 infection
Brite
KEGG Orthology (KO) [BR:oor00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    101273482
 09160 Human Diseases
  09172 Infectious disease: viral
   05170 Human immunodeficiency virus 1 infection
    101273482
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oor03019]
    101273482
Messenger RNA biogenesis [BR:oor03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     101273482
SSDB
Motif
Pfam: APOBEC2 NAD2 NAD1 APOBEC_N SNAD4 APOBEC3 APOBEC_C APOBEC4_like APOBEC4 APOBEC1 dCMP_cyt_deam_1 MafB19-deam
Other DBs
NCBI-GeneID: 101273482
NCBI-ProteinID: XP_012392103
LinkDB
Position
11:93653674..93667222
AA seq 417 aa
MEPQHPRQRAGMGLASKGGCSQRPRIRHPVERLDRQTFSFHFRNLRFASGRNCTYLCYQV
ERLKHCSPDFSDWGVFQNWVYPCHVELCFLSWFRAKKLSSHEQYRITWFLSWSPCLSCAE
QVVAFLKENRNVRLSIFAARLYYFWKPDYQHGLRILRHQRAWVRIMSFRDFKYCWKNFVY
NQGMPFKPWKKLRKNYQFLVAKLHEILGNTMNLLKTNIFRQQFGNQPRVPQPCYRRKTYL
CYQLKQLDGFTLDKGCFQNKKQRHAEIRFIDKITSLNLDPNQRYKIICYVTWSPCAACAG
ELVDFINGQDNLSLQIFASRLYFHWVKVFQRGLQQLQAAQVSVAVMTRSEFEDCWEEFVD
NQGMPFESWDKLEQYSESISRRLQRILSPSNWNNLEDSFRDLRLGSPSPSSLRSDSR
NT seq 1254 nt   +upstreamnt  +downstreamnt
atggagccccagcacccgagacaaagggcagggatgggactagccagcaaaggaggctgc
agccagaggccccggatcagacacccagtggagcggttagatcgccaaaccttctccttc
cactttcgcaacctgagatttgccagtgggcggaactgcacctacctctgctaccaggtg
gaaagactgaagcactgctcacctgacttctccgactggggggtctttcaaaactgggtc
tatccctgccatgtggaactctgcttcctctcttggtttcgcgctaagaagctgtcctct
cacgagcagtaccgcatcacctggttcttatcctggagcccctgcttgtcatgtgcagag
caggtggttgcgttcctgaaggagaacaggaacgtgaggctgagcatcttcgccgcccgc
ctctactacttctggaaaccagattaccagcacgggctgcgcatactgcgccaccagagg
gcctgggtgcgcatcatgtccttccgagactttaaatactgttggaaaaactttgtgtac
aatcagggaatgcccttcaagccttggaagaaactgcgtaaaaattatcagttcctggtg
gcaaagcttcatgaaattctcggaaacacaatgaatctgctaaaaacaaatatattcaga
caacagtttggcaaccagccccgggtcccacagccctgctaccggaggaagacctatttg
tgctaccagctgaagcagctcgacggcttcacgcttgacaaaggctgcttccaaaacaag
aaacagcgacatgcagaaattcgctttattgacaagatcacctcactgaatctcgaccca
aaccagcgctacaaaatcatctgctatgtcacgtggagcccctgcgctgcctgtgccggg
gaactggttgatttcatcaacggtcaggacaacctgagcctgcagatctttgcctcccgc
ctgtacttccactgggtcaaggtgtttcagagggggctgcagcagctacaggcagcccag
gtctcagtggctgtcatgacccgctcagagtttgaagactgctgggaagaatttgtggat
aaccaggggatgcccttcgagtcctgggataagctggagcaatacagtgagagcataagc
cgtcggctccagaggatcctgtcgccctcgaattggaataatttagaggattccttcaga
gacttgagacttggatccccatccccttcgtcgttaagaagtgactcaagatga

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