Orcinus orca (killer whale): 101283920 Help Entry 101283920         CDS       T05247                                  Symbol THBS1 Name (RefSeq) thrombospondin-1   KO K16857   thrombospondin 1 Organism oor  Orcinus orca (killer whale) Pathway oor04015   Rap1 signaling pathway oor04115   p53 signaling pathway oor04145   Phagosome oor04148   Efferocytosis oor04151   PI3K-Akt signaling pathway oor04350   TGF-beta signaling pathway oor04510   Focal adhesion oor04512   ECM-receptor interaction oor04820   Cytoskeleton in muscle cells oor05144   Malaria oor05165   Human papillomavirus infection oor05205   Proteoglycans in cancer oor05206   MicroRNAs in cancer oor05219   Bladder cancer Brite KEGG Orthology (KO) [BR:oor00001]  09130 Environmental Information Processing   09132 Signal transduction    04015 Rap1 signaling pathway     101283920 (THBS1)    04350 TGF-beta signaling pathway     101283920 (THBS1)    04151 PI3K-Akt signaling pathway     101283920 (THBS1)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     101283920 (THBS1)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     101283920 (THBS1)    04148 Efferocytosis     101283920 (THBS1)   09143 Cell growth and death    04115 p53 signaling pathway     101283920 (THBS1)   09144 Cellular community - eukaryotes    04510 Focal adhesion     101283920 (THBS1)   09142 Cell motility    04820 Cytoskeleton in muscle cells     101283920 (THBS1)  09160 Human Diseases   09161 Cancer: overview    05206 MicroRNAs in cancer     101283920 (THBS1)    05205 Proteoglycans in cancer     101283920 (THBS1)   09162 Cancer: specific types    05219 Bladder cancer     101283920 (THBS1)   09172 Infectious disease: viral    05165 Human papillomavirus infection     101283920 (THBS1)   09174 Infectious disease: parasitic    05144 Malaria     101283920 (THBS1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:oor04131]     101283920 (THBS1)   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:oor00536]     101283920 (THBS1) Membrane trafficking [BR:oor04131]  Endocytosis   Phagocytosis    Opsonins     101283920 (THBS1) Glycosaminoglycan binding proteins [BR:oor00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    101283920 (THBS1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_CFP_C EGF_3 cEGF Laminin_G_3 TSP1_ADAMTS Laminin_G_2 TSP1_CCN EGF Laminin_G_1 Motif Other DBs NCBI-GeneID:  101283920 NCBI-ProteinID:  XP_004274061 LinkDB All DBs Position 2:complement(118260929..118277157) Genome browser AA seq 1170 aa AA seqDB search MGLAWGLSVLFLWHVCGSNRIPESGGDNSVFDIFELTGAARKGSGRRLVKGPDPSSPAFR IEDANLIPPVPDDKFQDLVDAVRVEKGFLLLASLRQMKKTRGTLLAVERKDHSGQVFSVV SNGKAGTLDLSLTVQGKQHVVSVEEALLATGQWKSITLFVQEDRAQLYIDCEKMENAELD APIQSIFTRDLASIARLRIAKGGVNDNFQGVLQNVRFVFGTTPEDILRNKGCSSSTSVLL TLDNNVVNGSSPAIRTNYIGHKTKDLQAMCGISCDELSNMVLELRGLRTIVTTLQDSIRK VTEENKELVNELRRPPLCYHNGVQYRNSEEWTVDSCTECRCQNSVTICKKVSCPIMPCSN ATVPDGECCPRCWPSDSADDGWSPWSEWTSCSVTCGNGIQQRGRSCDSLNNRCEGSSVQT RTCHIQECDKRFKQDGGWSHWSPWSSCSVTCGDGVITRIRLCNSPSPQMNGKPCEGEARE TKACQKDACPINGGWGPWSPWDICSVTCGGGVQKRSRLCNNPTPQFGGKDCIGDVTENQI CNKQDCPIDGCLSNPCFADVKCTSYPDGSWKCGACPPGYSGNGIQCKDVDECKEVPDACF NHNGEHRCENTDPGYNCLPCPPRFTGSQPFGRGVEHATTNKQVCKPRNPCMDGTHDCNKN AKCNYLSHYSDPMYRCECKPGYAGNGIICGEDTDLDGWPNKDLVCVANATYHCKKDNCPN LPNSGQEDYDKDGIGDACDDDDDNDKIPDDRDNCPFHYNPAQYDYDRDDVGDRCDNCPYN HNPDQADTDNNGEGDACAADIDGDGILNERDNCQYVYNVDQRDTDMDGVGDQCDNCPLEH NPDQLDSDSDRIGDTCDNNQDIDEDGHQNNLDNCPYVPNANQADHDKDGKGDACDHDDDN DGIPDDKDNCRLVPNPDQKDSDGDGRGDACKDDFDQDNVPDIDDICPENVDISETDFRRF QMIPLDPKGTSQNDPNWVVRHQGKELVQTVNCDPGLAVGYDEFNAVDFSGTFFINTERDD DYAGFVFGYQSSSRFYVVMWKQVTQSYWDTNPTRAQGYSGLSVKVVNSTTGPGEHLRNAL WHTGNTPGQVRTLWHDPRQIGWKDFTAYRWRLSHRPKTGFIRVVMYEGKKIMADSGPIYD KTYAGGRLGLFVFSQEMVFFSDLKYECRDS NT seq 3513 nt NT seq  +upstreamnt  +downstreamnt atggggctggcctggggactcagtgtcctgttcctgtggcatgtgtgcggctccaaccgc attccagagtctgggggagacaacagcgtgtttgacatctttgaactcacgggggctgcc cgcaagggttccgggcgccgactggtgaagggtcctgacccttccagccccgctttccgc atcgaggatgccaacctgatcccccctgtgcctgacgacaagttccaagacctagtggat gctgtgcgggtggagaaaggtttcctcctcctggcctccctgaggcaaatgaagaagacc cggggcacgctgctggccgtggagcggaaagaccactccggccaggtcttcagcgtggtc tccaatggcaaggcgggcaccctggacctgagcctgaccgtgcaggggaagcagcatgtg gtgtcggtggaagaagcactcctggcgaccggccagtggaagagcatcaccctgtttgtg caggaggacagggcccagctctacatcgactgtgagaagatggagaatgctgagctggat gctcccatccaaagcatcttcaccagggacctggcgagcatcgccaggctccgcatcgcc aaaggaggtgtcaatgacaatttccagggcgtgctgcagaacgtgagatttgtctttgga accacaccagaagacatcctcaggaacaaaggctgctccagctctaccagtgtccttctc acccttgacaacaatgtggtgaacggttccagccctgccatccgcaccaactacattggc cacaagacaaaggatctgcaagccatgtgcggcatctcctgtgacgagctatccaacatg gtcctggagcttaggggcctgcgcaccatcgtgaccacgctgcaggacagcatccgcaaa gtgactgaagagaacaaagagctggtcaatgagctgaggaggcccccgctctgctaccac aacggagtccagtacaggaatagcgaggagtggacggtggacagctgcactgagtgtcgc tgccagaactcagttaccatctgcaagaaagtgtcctgcccaatcatgccctgctccaat gccacagttcctgatggagaatgctgcccgcggtgttggcccagcgattctgcggacgat ggctggtccccatggtctgagtggacctcttgctctgtgacatgtggcaacggaatccag cagcgtggccgctcctgcgacagcctcaacaacagatgcgagggctcctccgtgcagaca cggacctgccacattcaggagtgtgacaagagatttaaacaggatggcggctggagccac tggtccccgtggtcgtcttgttctgtaacatgtggagacggtgtgatcacaagaatccgg ctgtgcaactctcccagcccccagatgaatgggaagccatgtgagggcgaagctcgggag accaaagcctgccagaaagacgcctgccccatcaatggaggctggggaccctggtcgcca tgggacatctgttccgtcacctgtggaggaggggtgcagaaacggagtcggctctgcaac aaccccacaccccagtttggaggcaaggactgcattggtgatgtgacagaaaaccagatc tgcaacaagcaggactgtcccatcgatggatgcctgtccaatccctgctttgcggacgtc aagtgtaccagctaccctgacggcagctggaagtgtggtgcttgtcccccgggctacagc ggaaatggcatccagtgcaaagatgttgatgagtgcaaagaagtccctgatgcctgcttc aaccacaacggagagcacaggtgtgagaacacagaccccggctacaactgcctgccctgc ccaccacgcttcaccggctcgcagccctttggccggggcgtggaacatgccaccaccaac aaacaggtgtgcaagccccgcaacccctgcatggacggcacacacgactgcaacaagaat gccaagtgcaactacctgagccactacagtgaccccatgtaccgctgcgagtgcaagccc ggctacgccggcaacggcatcatctgtggggaggacacagacctggacggctggcccaac aaggacctggtgtgcgtggccaatgcaacttaccactgcaaaaaggataattgccccaac cttcccaactcagggcaggaagactatgacaaggacggaatcggcgacgcctgtgacgat gacgatgacaatgataaaattccagatgacagggacaactgtccgttccattacaaccca gcccagtatgactatgacagagacgacgtgggagaccgctgtgacaactgcccctacaac cacaacccagaccaggctgacacggacaacaacggggaaggagacgcctgcgcagcagac attgatggggacggtatcctcaatgaacgggacaactgccagtatgtctacaacgtggac cagagagacactgacatggatggggttggagatcagtgtgacaactgccccctggaacac aatccagatcagctcgattctgactcggaccgcattggagatacctgtgacaacaatcag gacattgatgaagacggccaccagaacaacctggacaactgtccctacgtgcccaacgcc aaccaggctgaccatgacaaggatggcaagggcgatgcctgcgaccatgacgatgacaat gacggcattcctgatgacaaagacaactgcaggctcgtgcccaatcctgaccagaaggac tctgatggtgatggtcgaggtgatgcttgcaaagatgattttgaccaggacaacgtgcca gacatcgatgacatctgtcccgaaaacgttgacatcagtgagaccgatttccgccgattc cagatgattcctctagatcccaaagggacgtcccaaaatgaccctaactgggttgtacgc catcagggtaaagaactcgtccagaccgtcaactgcgatcctggacttgctgtaggttat gatgagtttaacgctgtggacttcagtggcaccttcttcatcaacaccgaaagggatgat gactatgccggatttgtctttggctaccagtccagcagccgcttctacgttgtgatgtgg aagcaagtcactcagtcctactgggacaccaaccccacaagggctcagggatactccggc ctttctgtgaaggtcgtgaactccaccacggggcctggcgagcacctgcggaatgccctg tggcacacaggaaacacccccggccaggtacgcacgctgtggcatgaccctcgtcaaata ggctggaaagatttcaccgcctacagatggcgtctgagccacaggccaaagacgggtttc attagagtggtgatgtatgaagggaagaaaatcatggccgactcaggacccatctatgac aaaacctatgctggcggtaggctagggttgttcgtcttctctcaagaaatggtgttcttc tctgacctgaaatatgaatgcagagattcctaa

DBGET integrated database retrieval system