Orcinus orca (killer whale): 101287991
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Entry
101287991 CDS
T05247
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X2
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
oor
Orcinus orca (killer whale)
Brite
KEGG Orthology (KO) [BR:
oor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
oor03036
]
101287991 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
oor03400
]
101287991 (SMCHD1)
Chromosome and associated proteins [BR:
oor03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
101287991 (SMCHD1)
DNA repair and recombination proteins [BR:
oor03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
101287991 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
IFT20
DUF4763
Motif
Other DBs
NCBI-GeneID:
101287991
NCBI-ProteinID:
XP_004275971
LinkDB
All DBs
Position
15:54514930..54643799
Genome browser
AA seq
1997 aa
AA seq
DB search
MAAADDGGPSVGTGEGDGGDGSRTVYLFDRREKESELGDRALQVTERSDFAAFRASVCQT
LGISPEEKFVITTTSRKEITCDNFDETVKDGVTLYLLQSVSQLLLTATKERIDFLPHYDT
LVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNTGVRRIQIKLHFDETQGKPAVAVI
DNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPLPVPRSLNSDISYFGVGGKQAV
FFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSVHITNDDE
RFLHHLISEEKEKDSFTAVVITGVQPEHIQYLKNYFLLWTRQLTHIYHYYIHGPKGNEKR
ASKEVGPFNNIDIEISMFEKGKTPKIINLREIQDDMQTLYINTAADSFEFKAHVEGDGVV
EGIIRYHPFLYDRETYPDDPCFPSKLKDEDDDDDCFILEKAARGKRPIFECFWNGRLIPY
TSVEDFDWCTPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFT
RILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGIITRPDLPSKKQGPWATYSAIE
WDGKIYKAGQLVKTIKTLPLFYGSIVKFFLYGDHDGEVYATGGEVQIAMEPQALYDEIKT
VPIAKLDRTVAEKAVKKYVEDEMARLPDRLSVTWPEGDELLPNEIRPAGTPIGALRIEIL
NKKGEAMQKLPGTSHGGSKKLLVELKVILHSPNGNKEIISHISQHGGKWPYWFKKMENIQ
KLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFLFGLLDLPFRVGVPFNI
PLEFQDEFGHTSQLSTDIQPVFEASGLSLHYEEITNGPNCVIRGVTAKGPVNSCQGKNFN
LKVIFPGLKEDSQILKIRLLPGPPHRLKVKPDSEILVIENGTAFPFQVEVLDESDNITAQ
PKLIVHCKFSGAPNLPLYVVDCSSSGTSILSGPAIQVQNIKKDQTLKAKIEIPSCKDVAP
VEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDIMHNLIFQMYDEGEREIHI
TSALAEKIKVNWTPEINKEHLLKGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFTVRP
LPDEPKHLKCELKGGKTVQMGQELQGEIVIIVTDQYGNQIQAFSSSSLSSLGIAGIGLDS
SHLKTTFQENTQSISVRGIKFIPGPPGNKDLCFTWREFSDFIRVQLISGPPAKLLLVDWP
ELKESIPVINGRELQNPLIVQLCDQWDNPALVPQVKISLIKANNLKLTPSNQQHKTDERG
RANLGVFSVYAPRGEHIMQVKAIYNKNTIEGPIIKLMILPDPEKPIRLNVKYDKDASFLA
GGIFTDFMITVISEDDSIIKNINPARISMKMWKLSNSGNRPPANAEIFSCNKIKDNDKED
GCFYFRDKAIPNKVGTYCIQFGFMMDKANILNSEQIIVDVLSNQPVKLVPEIQPATPAVS
NVRSVASRTLVKDLYLRITDDYNNHTGIDLVGTVMATIKGSNEEDDTPLFIGKVRTLEFP
FVKGSAEITSLVLAENSPGRDSTEYFIVFEPRLPGLSRTLESYILPFMFYNDVKKQQQMA
ALTKEKDQLSKSIIMYRSLFDASKQLLDEMKCQVEEAKLKEAQLRNELKTHNIDIPTTQQ
MPHIEALLKNKISEQEELKKKPRRSCTLPNYTKGSGDVLGKIAHLAQIEDDRAAMVISWH
LASDMDCVVTLSTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRPLPHYRNGKLYFKPI
GDPVFARDLLTFPDNVEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLLTRDG
DRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKQCLILGEQIDLLQQYRTAVCRLGSVNK
DLNGQLEYLHTPDMKKKKQELDEQEKNLKLIEQKLGMTPTRKCNDSLRHPMTDCPVPPKR
MRREVTRQNRIITKTDV
NT seq
5994 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcggacgacggcgggccctcggtggggaccggagagggcgacggaggcgac
ggctccaggacggtgtacttgtttgaccggcgcgagaaggagtcggagctcggggaccgg
gcgctgcaggtcacggagcgctcggactttgcggcgttccgcgcttcagtgtgtcagaca
cttggcatttcacctgaagaaaaatttgttattacaacaacaagtaggaaagaaattacc
tgtgataattttgatgaaactgttaaagatggagtcactctgtacctgctacagtcagtc
agtcagttactactaacagctacaaaagaacgaattgacttcctacctcactatgacaca
ttggttaaaagtggcatgtatgaatattatgcaagtgaaggacaaaatcctttaccattt
gctcttgcagaattaattgataattcattgtctgccacgtctcgtaacactggtgttaga
agaatacagatcaaattgcattttgatgaaacacaaggaaaacctgccgttgcagtgata
gataatggaagaggaatgacctctaaacagcttaacaactgggccgtgtataggttgtca
aaatttacaaggcaaggtgactttgaaagtgatcattcaggatatgttcgaccactacca
gtgccacgcagtttaaatagtgatatttcctattttggtgttgggggcaagcaggctgtt
ttctttgttggacaatcagccagaatgataagcaaacctgcagattcccaggatgttcat
gaacttgtactttctaaagaagattttgagaagaaggagaaaaataaagaggcaatatat
agcggatatattagaaacagaaagccgtctgattctgttcacattacaaatgatgatgaa
agatttctacatcatcttatctcagaggagaaggaaaaagatagctttactgctgtggtt
atcacaggggtacaaccagaacacatacagtacttgaaaaattatttccttctttggacg
agacagttaacgcatatttatcattactatattcatggcccaaaagggaatgaaaaacgt
gcatcaaaggaagttggacctttcaacaacattgatattgaaatttctatgtttgaaaag
gggaagacacctaagattatcaacctaagggaaatacaagatgacatgcagacgttgtat
ataaatacagcagccgatagttttgagttcaaggctcatgttgaaggagatggtgtagtg
gaagggattatccgatatcacccttttttatatgatagagaaacgtatcctgatgatcca
tgctttccatcaaaattaaaagatgaagatgatgatgatgactgtttcatacttgagaaa
gcagcaagagggaaaagacctatttttgaatgtttttggaatggacgactaataccatat
acatctgttgaagactttgactggtgtactcctcctaagaagagagggcttgcaccgatt
gagtgctacaataggatatctggtgcattattcactaatgacaaattccaggtcagcaca
aataaactgacctttatggatcttgagctaaaattgaaagataagaacaccctttttaca
aggattttaaatggacaggagcagcgaatgaaaattgacagagaatttgctctatggctg
aaggactgtcatgaaaagtatgacaaacaaataaaatttacactttttaaaggaataatt
acacgtcctgatcttccttctaaaaagcagggcccctgggcgacttattcagcaatagaa
tgggatggaaaaatatacaaagcaggacaactggtcaagacaatcaagacacttcctctc
ttttatggaagcattgtaaaattttttctttatggtgatcatgatggagaagtatatgct
acaggaggagaggttcaaattgcaatggaacctcaggcactgtatgatgaaataaaaact
gtgccaattgcaaagctggataggacagttgctgagaaagctgtgaaaaaatacgtagaa
gatgaaatggcaaggctccctgatagattgtcagtaacttggcctgaaggagatgaatta
ttgccaaatgagattaggcctgctggaacccccattggtgcattaagaattgaaatattg
aataaaaagggggaagcaatgcaaaagcttccaggaacaagtcatggagggtcaaagaaa
ctcctggttgagctcaaagttatactacactctccaaatggaaataaagaaatcatttca
catattagtcaacatggaggaaaatggccttactggtttaaaaaaatggaaaatattcaa
aagttggggaattatacattgaaattacaagttgtactgaatgaaagtaatgcagacact
tatgcaggaagaccactaccatctaaagcaattaaattttctgtcaaagagggtaaacca
gagaaatttttatttggtcttttggatcttccttttcgtgttggagtcccattcaatatc
cctctggagtttcaggatgaatttggtcatactagtcaactatcaactgatattcagcca
gtttttgaagcaagtggtttatctttacattatgaagaaataaccaatggcccaaattgt
gtcattcgaggtgttacagctaagggccctgtaaactcttgtcaaggcaagaattttaat
ctgaaggttatttttccgggtttaaaagaagactcacagattctgaaaattagattactg
ccaggtccccctcatcgattgaaagtgaaacctgattctgaaattttagttatagaaaat
ggaacagctttcccatttcaggtagaagttttggatgaatcagacaatataacagcacaa
ccaaaattgattgttcattgtaagttttcaggtgctccaaaccttccactctatgttgtg
gattgcagtagttctggaaccagtattttgtcaggaccagcaattcaagttcagaatatc
aaaaaagaccagacgcttaaagcaaaaattgaaatacctagttgtaaagatgtggcacct
gtggagaagactattaagttgcttcccagtagccatgttgcaagattacagatattcagt
gtagaaggacaaaaggcaatccagatcaaacatcaggatgaggttaattggatagcagga
gatattatgcataaccttatttttcaaatgtatgatgaaggagaaagagaaatccatata
acatcagctttagcagagaaaattaaagttaactggactcctgagattaacaaagagcac
ttactaaagggtctgcttcctgatgtacaagtaccaacatctgtaaaagatatgcgctat
tgccaggtttcgttccaagatgatcatgtgtctttggaaagtgcatttacagtaagacca
cttcctgatgaacctaaacatctaaaatgtgaattaaaaggaggaaaaactgtacagatg
ggccaagagcttcaaggagaaatagttataatagttacagatcagtatggaaatcagatt
caagcattttcatcaagttctctatcttccttgggaattgctgggattggacttgatagc
tcacatttgaaaactacttttcaggaaaatacacaaagtataagtgtgagaggcatcaaa
tttattccaggtccccctggaaataaggatctttgttttacgtggcgtgagttttctgac
tttattcgagtgcagctaatttctgggccaccagctaaacttctccttgtagactggcca
gagttaaaggagtccattccagtgattaacggaagagaattacagaatcctctcattgtt
caactttgtgatcagtgggataatccagcacttgtgccacaggttaaaataagccttata
aaagctaacaatttaaagctcactccttcaaaccaacagcataaaaccgatgaaaggggc
agggctaatttgggagtgttcagtgtttatgcccctagaggagaacatattatgcaggtt
aaagccatttataacaagaatactatagaaggacctataattaagttaatgattcttcca
gaccctgaaaaacccattcgtctcaatgttaaatatgacaaagatgcttcctttttagca
gggggtattttcactgattttatgattactgttatttctgaagatgacagtatcattaaa
aatattaatccagcacgtatttccatgaaaatgtggaaactgtcaaacagtgggaaccga
ccaccagcaaatgcagaaatatttagttgtaataaaataaaggataatgacaaggaagat
ggctgcttctacttcagggataaagcaattcctaacaaagtggggacatattgtatccag
tttggttttatgatggataaagcaaatatccttaacagtgagcagattatagtggatgtt
ctatctaatcaacctgtgaagttagttcctgaaattcagccagctacaccagctgtttca
aatgttcgttcagttgccagtaggaccttggtcaaagatttatatcttcgtatcacggat
gactacaacaatcatactggaattgatttggttggcactgtaatggctaccatcaaaggc
tctaatgaggaagatgacaccccactctttattgggaaagttagaacacttgaatttccc
tttgtgaaaggttcagctgaaatcacgagtctagttctggcagaaaatagtcctggaagg
gatagcactgagtattttattgtgtttgagcctcggctaccaggtttatcaagaacatta
gaatcatatatcctaccatttatgttttacaacgatgttaagaagcagcaacaaatggca
gcacttacaaaagaaaaggaccaattatctaagtctattataatgtatagaagtttattt
gatgccagcaaacagcttcttgatgagatgaagtgccaagttgaagaagcaaaattaaaa
gaggcccagttgagaaatgaactaaaaacacacaatattgacattcctacaacacaacag
atgccacacattgaagcacttttgaagaataagatatcagaacaggaagaactaaagaaa
aaacctagaagatcatgtactcttccaaactatactaaaggcagtggagatgttttagga
aagattgcacacctggcacaaattgaagatgatagagccgcaatggttatttcttggcat
ctggcaagtgacatggactgtgtggtcaccctgagcactgatgctgcacgtcgtatctat
gacgaaacccaaggtcgtcagcaggtgttgccccttgattctatttataagaagactctt
ccagattggaaaagacctctgcctcattaccgaaatggaaaattgtattttaaacccatt
ggagatcctgtctttgcccgagatttgttaacgtttccagataacgtagaacattgtgaa
acagtgtttggtatgctgttaggagacaccattattttggataatttggatgctgctaat
cattatagaaaagaggttgttaaaattacacactgtcctacactgctgaccagagatgga
gatcgcattcgaagtaatggaaagtttgggggccttcagaataaagctcctccaatggat
aaacttcggggaatggtctttggagctccagtaccaaaacagtgcctgatcttaggggaa
caaatagatcttcttcagcagtaccgcactgctgtgtgcaggttgggcagtgtgaacaag
gaccttaacgggcagttggaataccttcacactccggatatgaagaagaaaaaacaggaa
cttgatgaacaagagaagaatctcaaactgatagagcaaaaactaggtatgactcccaca
cgtaagtgtaatgactcactgcgtcatccaatgacagactgtccagttcctcctaagaga
atgagaagagaagttacaagacaaaataggattataaccaaaacagatgtgtga
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integrated database retrieval system
