Ogataea parapolymorpha: HPODL_03640
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Entry
HPODL_03640 CDS
T08137
Name
(RefSeq) CCR4-NOT complex associated factor Caf16p
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
opa
Ogataea parapolymorpha
Pathway
opa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPODL_03640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
opa03019
]
HPODL_03640
Messenger RNA biogenesis [BR:
opa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
HPODL_03640
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
SMC_N
AAA_29
AAA_33
AAA_23
AAA_22
RsgA_GTPase
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
25773076
NCBI-ProteinID:
XP_013935441
UniProt:
W1QE97
LinkDB
All DBs
Position
IV:complement(1076519..1077316)
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AA seq
265 aa
AA seq
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MVGPNGAGKSTLLRVLAGQKLIKQGRLLLNGRDPFKLASAGNSGVITYLGTEWASNDITK
RDIPVTVLIDSVGGTNYKERRDLLINMLDIDITWRMNQCSDGERRRVQLCMGLLKPWDLL
LLDEVTVDLDVLVRSRLLTFLRQETEQRNATIVYATHIFDGLGDWSSEIIHFRGGCIVAK
HSIDRVKYKDSEDTVLETELAVEVPKSRSIYPLALSWLEQDLHLRGERTEDKTRPKYEDL
SQLANEQYYDDKERVTSYFKTTRKI
NT seq
798 nt
NT seq
+upstream
nt +downstream
nt
ctggtcgggccaaatggggccggaaagtcgactctgcttcgtgtcctagcaggccaaaaa
ctcatcaagcagggcaggttattactcaatggtagagacccgttcaaattggcatctgca
ggcaattcaggcgtcatcacgtacctgggcactgaatgggcatctaacgatattacgaag
cgagatattccggtcacagtgctcatcgactctgttggaggaaccaactacaaagagcgt
agagatctgttaataaatatgctggacattgacatcacctggagaatgaaccaatgctcg
gatggagagcgtcgcagagttcagctgtgtatgggactgctgaagccgtgggatctgctg
ctcctagatgaggtcaccgtggacctggacgttttggtgcggtcgcggttgctgacattt
ctgcgccaggaaacagagcaacgaaatgccaccatcgtgtacgccacacatattttcgac
ggtttgggcgactggtcgagcgaaatcattcatttccgtggcgggtgcattgtcgccaag
cattcgatagacagagtgaaatacaaggacagcgaagacacagtgctggagacggagctt
gccgtggaggtgccaaagtcaagatcaatatatcctctggcacttagctggctcgagcag
gaccttcatctacgtggcgagcgcacagaggataaaacccgaccaaagtacgaggattta
tcacagctggcaaatgaacagtactacgacgataaggagagagtcactagttacttcaag
actacaaggaagatttag
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