Ogataea parapolymorpha: HPODL_04978
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Entry
HPODL_04978 CDS
T08137
Name
(RefSeq) U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
opa
Ogataea parapolymorpha
Pathway
opa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
HPODL_04978
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
opa03041
]
HPODL_04978
Spliceosome [BR:
opa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
HPODL_04978
Complex C
U5 SnRNP specific factors
HPODL_04978
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFG_C
EFG_IV
EFTUD2
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
SRPRB
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
25774401
NCBI-ProteinID:
XP_013936812
UniProt:
W1QLH8
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All DBs
Position
II:complement(<815975..>818830)
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AA seq
951 aa
AA seq
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MSEELYDEFGNLIGVPETESSSDEAMEVNHSEVAVRQPELQEVFGEDVETIIATSDAKDI
SEPIVEPVTEQKFKVEEEDLPETFYSKDYLWNMTFLPSKVRNIALVGGLHSGKTTFLDQL
VHETHDINHIQAKDYKPLRYTDNHTIEIKRGISIKTSTMSLLMPDLEQKSTVTHILDAPG
HVDFVDEMAVAVRLADVAVLVVDVVEGLTKGLQLALDHILLTNTPFCLNISKFDRLILEL
RLPPLDAYYKLRSIVHEINDYVSSSKHVKNGSYTRQTALSPALGNVCFSSSNLNSCFTLR
SIAKKYLDNSKLDIDTFATKLWGDIYYIDKKFTVKPPDKAAHAKSRSFIKFVLEPIYKLI
TATLTKSPKELEQYLEESHGITSIHPSKFKLDVQLLLKEVFFAFFGGVCPPFVDLIQQMP
SPEDMNVDKFNLLYKGNASDELLSHIEKCDPNGPVIAYVAKLIDSASAARFYAQVRVLSG
TLKTGNSVLLLGENYSPEFTDDMKVQDVRRAFLSCTRYKIPVEGIPAGSIGLISGHDIDV
FISKTATIFDQKLKSPTLEIFRPLDKISKPVFKVAVQPANPSELSKFTEGLKKLNRSYVG
SEIRVEQGGEHVILGYGELYLDCLLHDLRLLYAKLDIKVSDPVARFSETCLDISKVKLVT
ESANTKNSLTVIAEPLEESISRDIEAGVLVPSIPSRELAKRLRNDYGWDALAARSVWAFG
PDETGTCILLEDTLPEETDKSRLAELKELIIQGFKWSTREGPLCDEPVRNIKFRIIGAQL
STNFLESNGAQIIQMSRKACYTAMMIATPRLLEPIYEIEILCFSSVLPALNKLLDRRRGQ
ITNDNPVEGTPLYKVYGYIPVIESVGLETDIRMYSRGQAMCQLVFSHWSVVPGDPLDEDC
FIPVLKPAPIQSLSRDFTMKTRKMKGLDDEPSLKKYVNHEVFEKLKSAGII
NT seq
2856 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaagaactctacgatgagtttggaaaccttattggtgttccagagaccgagagc
tcaagtgacgaggcaatggaggtcaaccactcggaggtcgctgttagacagcctgaatta
caagaggtttttggagaagatgtagagactattatagcgacatctgatgcaaaagatatt
agtgagcctattgttgagcctgttacagagcaaaagtttaaagtagaagaggaagacctt
cctgagacattctattcaaaggattatttatggaatatgacattcctcccgtccaaagtg
cgaaatattgcacttgtcggtggtttgcactcagggaaaactacgtttctagaccaacta
gtccatgaaacccatgacatcaatcacattcaagcgaaagattacaagcctcttcgatac
acggacaatcacacgatagagatcaaacgggggatttccataaagacatctaccatgtca
ctattaatgccagatctcgaacaaaaatccaccgtcacacacattcttgacgcccctgga
cacgttgattttgttgatgaaatggctgtggcagtaagacttgctgatgttgcagttcta
gttgttgacgtggttgaaggtttaaccaaaggtttgcagctggctctagatcatattttg
cttacaaacactcccttttgtctcaacatttcgaagtttgaccgcttgattttggaactc
agactaccgccactagacgcctactataaacttcgcagcattgttcacgaaatcaacgac
tatgtttcttcatctaagcacgtcaaaaatggcagctacacacgacaaacggctctctcg
cctgctcttggaaatgtttgttttagctccagcaacctcaacagctgtttcactttgcgc
agtattgcaaagaaataccttgataactccaagttggatattgacacatttgctaccaaa
ctttggggagacatttattatattgacaagaaatttactgttaagcctccagacaaggca
gctcatgccaaatccagaagtttcatcaagtttgtcttggaaccgatatataagctgatc
accgctactttgacgaaaagtccaaaagaattagaacaatatctcgaggagtcccatgga
attaccagtattcatccttcaaaattcaagctagatgtccaacttctgttaaaagaggtc
ttttttgcatttttcggaggtgtctgcccaccctttgtcgacttaatacagcaaatgcct
tccccagaggacatgaatgttgataaattcaatttactatacaaaggcaatgcctctgat
gaactgctttcacatattgaaaaatgcgatccaaacggcccagtcatagcgtatgtggca
aagctcattgactcagctagtgccgccaggttctatgctcaggtgcgcgtgctctcaggc
acactaaaaacaggcaattcagttctgctactgggcgaaaactacagccccgaatttaca
gatgacatgaaagtgcaggacgttcggcgcgcgtttttaagctgcacgcgctacaagatc
ccagtggaaggtattccagcagggtctataggattaatatcagggcacgacattgacgtg
tttatcagcaaaactgccaccattttcgaccaaaagctcaagtctccaacactggaaata
ttcaggccattggacaaaatatccaaaccggtcttcaaagttgctgtgcaacctgcaaac
ccgtctgagctttcgaaattcactgaaggcctaaaaaagctgaatagatcttatgtggga
tcagagattagagttgagcaaggaggcgagcacgtgatcttgggatacggagagttgtac
ttggattgtctgctccacgatttgcgtctgctgtatgctaaattggatatcaaggttagt
gatcctgtggctcgattttcggagacatgtttggacatctccaaagtgaagctggttaca
gaatctgccaacacgaaaaatagtcttacagtgatagcggagcccctggaggagagtatt
tccagagacatagaggctggagttcttgtaccatcaattccttctagggagcttgccaag
agactcagaaacgactatggatgggatgctttggctgcaagatctgtttgggcatttggt
cctgatgaaacgggaacgtgtatacttctcgaagacacactacctgaggagacagataaa
tcaaggcttgcggagctgaaagaattgattatccagggtttcaaatggtcaaccagagaa
ggtcctctttgcgacgagccggtgagaaatataaaattcaggattattggtgcacaatta
tctacaaactttttagaatcaaacggagcacaaatcattcagatgtcacggaaggcatgc
tacacggcaatgatgattgctactccgcgattactcgaaccgatttatgagattgaaatt
ttgtgcttttcgtcggtgttaccagcgctgaacaagctactcgatagaagaagaggccaa
atcaccaacgataatcccgtggaaggcactccgctatacaaagtgtacggatatattcca
gtgatcgagtctgtgggactagaaactgacattcgaatgtacagtcgtggccaagcaatg
tgccaacttgtgttcagccactggtccgtggttcctggagatccattggacgaggactgt
ttcattccggtgcttaagcctgcaccaatccagtccctgtcgcgcgactttaccatgaaa
accaggaaaatgaaaggtcttgatgacgagccgtctttgaagaaatacgtgaatcacgaa
gtctttgaaaaattaaagagcgccggaattatatag
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