Oceanisphaera profunda: CBP31_11465
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Entry
CBP31_11465 CDS
T04856
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
opf
Oceanisphaera profunda
Pathway
opf03030
DNA replication
opf03410
Base excision repair
opf03420
Nucleotide excision repair
opf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
opf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CBP31_11465 (ligA)
03410 Base excision repair
CBP31_11465 (ligA)
03420 Nucleotide excision repair
CBP31_11465 (ligA)
03430 Mismatch repair
CBP31_11465 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
opf03032
]
CBP31_11465 (ligA)
03400 DNA repair and recombination proteins [BR:
opf03400
]
CBP31_11465 (ligA)
Enzymes [BR:
opf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CBP31_11465 (ligA)
DNA replication proteins [BR:
opf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CBP31_11465 (ligA)
DNA repair and recombination proteins [BR:
opf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CBP31_11465 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CBP31_11465 (ligA)
MMR (mismatch excision repair)
DNA ligase
CBP31_11465 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CBP31_11465 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
DZR_2
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
ART83157
UniProt:
A0A1Y0D7H3
LinkDB
All DBs
Position
2601543..2603576
Genome browser
AA seq
677 aa
AA seq
DB search
MNDAKAQILALREQLERYNQQYYVSDAPTVPDAEYDRVMRELIDLEQAHPELLDADSPSQ
KVGGAPLSAFTPVEHAQPMLSLDNVFSLDELAAFEKRVLTRLNRSQAVQYCCEPKLDGLA
VSLMYEQGRLVQGATRGDGRTGEGITENVRTIKSIPLTLSGSGWPARFEVRGEVFMPSAG
FTAMNDAARERGEKIFANPRNAAAGSLRQLDSRITAKRPLAFYCYGVGLVEGEPLAASHY
DTLQRLKSWGLPVSPEVKLMTGQAGCEQYHDDILSRREQLAYEIDGVVYKVDDLALQAQL
GFVARAPRWATAHKFPAQEELTQLLNVEFQVGRTGAITPVAKLAPVQVAGVIVSNATLHN
ADEIARLGVMIGDTVIIRRAGDVIPQVAAVVLDKRPYDAQQIVFPNECPVCGAEVERIEG
EVVARCSGGLFCAAQRKEAIKHFSSRKALDIDGLGTKIIDQLVDAELVKTPADLFSLTQG
QLLGLARMGEKSASKLLAALDAARATTLARFLYALGIREVGEATANNLAQHFLTLDAVMS
AEVESLLKVADVGDIVAKHVYYFFRQADNQAVVHALVTPVEEGGCGLHWPEIIALAVEEQ
PLAGQTFVLTGTLSQLSRSDAKAALQALGAKVAGSVSAKTSCVVAGEAAGSKLVKAQELG
LTILDEDGLIALLAEHQ
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgaatgatgccaaagctcagatccttgctctgcgtgagcagctcgaacgttataaccag
caatactatgtgagtgacgcgcccacggtgccggatgcggaatatgaccgcgtaatgcgc
gagctgatagacctagagcaagcgcaccctgagttattagatgccgactcacccagtcaa
aaagtggggggggcgccgctctcagcctttacaccggtagagcatgcgcagcccatgttg
tcgttagataatgtgtttagccttgatgagctggccgcctttgaaaagcgcgtgctgacg
cgtttaaatcgcagccaagcggtgcagtattgctgtgagcctaagctggatggcctagca
gtcagccttatgtatgagcaagggcgcttagtgcagggtgccacccgtggcgatggtcgc
actggcgagggcattaccgagaacgtgcgcaccattaaaagcattccgcttaccttaagc
ggcagcggctggccggcacggtttgaagtgcgcggcgaagtctttatgccaagtgccggc
tttacggccatgaacgacgccgcccgcgagcgtggcgagaaaatatttgccaacccccgc
aatgccgccgctggcagcttacgccaactggactcgcgcattaccgccaagcgtccgctg
gcgttttactgctatggcgtagggctagtggagggcgagccgctggccgcgagccactat
gacaccttacaacggctaaagagctggggtttgccggttagccctgaggtgaaactgatg
acggggcaggcgggttgtgagcaatatcatgacgatattttaagccgccgagagcagtta
gcctacgagattgacggcgtcgtttataaagtcgatgacttagccttgcaagctcagctt
ggttttgtggcgcgcgcgccgcgttgggccaccgctcataagtttccggcacaagaagag
ctgacgcagctccttaatgtagagtttcaagtggggcgcaccggtgccattacaccggtg
gctaaattggcgccggtgcaagtggcgggggtgattgtctctaatgccaccttgcacaac
gcagacgagatagcccgcttaggcgtgatgatcggcgatacggtgattattcgccgcgca
ggggacgtgatcccgcaagtggcggcggtggtgttagacaaacgcccctatgatgcccag
cagattgtgttccccaacgaatgcccagtgtgcggtgccgaggtggagcgcatcgaaggc
gaagtagtagcgcgctgcagtggcggtttgttttgtgccgctcagcgtaaggaagccatt
aagcatttttcatcacgcaaggcgctggatatcgacgggctcggcaccaagatcatcgat
caattggtggatgctgaattagtgaaaaccccggcggatttgttttcgctcacccaaggg
caattattgggcttagcgcgcatgggtgagaagtcggccagcaagctattagccgcgctg
gatgcagcacgagccaccaccttagcgcgttttttatatgcgttaggcatccgtgaagtg
ggtgaagccacggccaataacttggcccagcattttttaacgctggatgcggtcatgagc
gccgaggtggagtcactgcttaaggtggccgatgtgggcgatattgtggccaagcatgtg
tattacttctttcgccaagcagataatcaagccgtggtgcacgctttggttacgccagtc
gaggagggcggctgtggcctgcactggccagaaattatagcgctggccgttgaagagcag
ccactggcaggccaaaccttcgtgctaacaggtactttaagccaattatcacgcagtgac
gctaaagcagccttgcaagcgctgggcgctaaggtggcgggatctgtttcggcaaaaacc
agttgtgtggtggccggcgaggctgccggctcgaagttagtaaaggcccaagagttaggg
ctcaccatcttggacgaagacggcttgatcgcattattagctgagcaccagtaa
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