Ochotona princeps (American pika): 101516267
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Entry
101516267 CDS
T07609
Symbol
SHPRH
Name
(RefSeq) E3 ubiquitin-protein ligase SHPRH
KO
K15710
E3 ubiquitin-protein ligase SHPRH [EC:5.6.2.-
2.3.2.27
]
Organism
opi
Ochotona princeps (American pika)
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
opi04121
]
101516267 (SHPRH)
Enzymes [BR:
opi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
101516267 (SHPRH)
Ubiquitin system [BR:
opi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
101516267 (SHPRH)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SHPRH_helical-1st
SHPRH_helical-2nd
Linker_histone
Helicase_C
zf-RING_UBOX
PHD
TPR_10
zf-C3HC4
zf-C3HC4_2
zf-RING_2
TPR_12
Sec23_trunk
PEP-utilisers_N
TPR_2
Motif
Other DBs
NCBI-GeneID:
101516267
NCBI-ProteinID:
XP_004587348
LinkDB
All DBs
Position
12:complement(133754998..133840291)
Genome browser
AA seq
1678 aa
AA seq
DB search
MSSRRKRALPVKVDEEKQQQLRWNMHDDRRDEPLTSTDDEHPCPSSGSRLPQGILLEVSL
EKEGAPRDTERCPAAGRPSKSAAKEGTVSLDSSLAVKLNIVVSPHNAGDSWKVLLGELTL
QLPPEQSLSENFSERSFTLMSSESSNQFWMYIHSESETVENEKNNLKEPITTDGKGILVE
SSFSNDMLEDLEWLQKKGRIRLYQRPEGNCIIKIGIYLLEAGLANLDYFSDANSRMKKFN
QLMKRVMNKLHNFVIPDVLEEHEDSSESEPEGQDIDELYHFVKQTHQQEARAVQVDVQHP
ALNPVLRPYQREAVKWMLQQERVRNTPADEHALHFLWREIITSDCWKIYYNPYTGCIIRE
FPNSGPQLLGGILADEMGLGKTVEVLALILTHTRQDVKQDALTLPEGKVVNYFVPSHCFG
GEAKDVGTRNMEFESKEKVHCPPTRVMILTAVKEMNGKKGVSIVSIYKYVSSIYKYDVQR
NRSLLKRMLRSLIFEGLVRQIKGHGFSGTFTLGKNYKEDNTWDKTKKQVIGSPKKHQKET
RKSGNKDTDSEYLPSNTSDDDDDDPYYYYYKARKNYNKLRKKPIFCTQKRKSQPKFSPNS
QDDGPATSDSGIMDVTMSESTCETKEEGASPAPAGSAGPHSDSQGPPDASDYRFECICGE
LNQTDCKARVQCLRCRLWQHAKCVNYEEKNLKIKPFYCPHCLVAMEPVSSRATLIISPSS
ICHQWVEEINRHVKSSSLHVLVYQGVKKHGFLQPDFLAEQDIVIITYDVLRSELNYVDIP
HSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEMARRLTGINRWC
VSGTPVQRGLEDLFGLVVFLGIEPYCVKHWWIRLLYQPYCKKNPQPLYSFIAKILWRSAK
KDVIDQIQIPPQTEEIHWLHFSPVERHFYHRQHEVCCQDAVVKLRKISDWALKLSSLDRR
TVTSILYPLLRLRQACCHPQAVRGEFLPLQKSTMTMEELLTSLQKKCVTECEEAHRQLVC
ALNGLAGVHIIKGEYAAAVELYREVLRSSEEHKGKLKTDSLQRLHATHNLMELLTAKHPG
IPPTLRDGKLEEEAKQLREHYMSKCNTEVAEAQQALQPVQQNIRELQRKIHMNSPWWLNV
IHRALEFAIDEELVQRVRNELTSNYKQQTDKLSMSEKFRDCRGLQFLLTTQMEELHKFQK
LVRDAVRNLEGPPSRSVIESATICHLRPVRLPLNCCVFCKADELFTEYESKLFSNTVKGQ
TAIFEEMIEDEEGLVDDRAPTTTRGLWATSETERSMKAILSFAKSHRFDIEFIDEGSIAM
DLFEAWKKEYKLLHEYWMALRNRVSAVDELAMATERLRVREPREPKPSPPVHHIIEPQEV
EQNRIKLLNDKAIATSQLQKKLGQLLYLTNLEKSQDRTSGGINPEPCPICARQLGKQWAV
LTCGHCFCNECVSIIIEQYSVGSHRSAIRCAICRQTTSHKEISYVFTSEKASQEEDIPVK
GSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQIGRVKTFQ
ENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTK
PTIVHRFLIKATIEERMQAMLKTAERSHTNSAGKNSEASVLTVADLADLFTRETEERE
NT seq
5037 nt
NT seq
+upstream
nt +downstream
nt
atgagcagccgtcggaaacgcgccctcccggtgaaggtggacgaagaaaagcagcagcag
ctccgctggaacatgcatgacgacagaagggatgagccgctcacctcaactgacgatgag
catccctgcccgagttcgggctctcgtcttcctcagggcatccttctagaagtcagctta
gagaaagagggggctcccagggacacggagaggtgcccagcagcagggaggccctccaag
tcagctgcaaaagaagggactgtcagccttgattcctccttggctgtgaagttgaatatt
gtggtttctccccataatgctggtgattcttggaaagtgttactgggcgaattaactctt
cagcttcctccggaacaaagtttaagtgaaaatttttctgaaaggagttttacattgatg
agttcagagtcaagcaatcaattctggatgtatattcattcagaaagtgaaactgtagag
aacgaaaaaaataacctcaaagagcccatcactactgatgggaagggtattctagtggaa
tcatccttcagtaatgacatgttggaagatttagaatggctgcaaaagaagggaagaatc
agactttaccaaagaccagaaggaaattgtattatcaagattggaatttatcttttggaa
gctggtctagcaaatctagactatttcagtgatgcaaattcaagaatgaaaaagttcaat
caactcatgaaaagagtgatgaataagttacacaattttgtgattccagatgtgctggaa
gagcatgaggacagttcagagagtgagccagagggacaagacatcgatgaactctaccac
tttgtgaagcaaacacatcagcaagaagcacgggctgtccaggtggatgtccagcatcct
gccttgaaccctgtgttaagaccctaccagagagaggctgtcaagtggatgctgcaacag
gagcgtgtcagaaacactcctgctgatgaacatgctctgcacttcttatggcgggaaatt
attacttcagactgttggaaaatatactataacccttatacaggctgcattatccgtgag
ttcccaaattctgggccacagctgcttggtgggattttagcagatgagatgggtctcggg
aagacagtggaagttttggctctgattctgacgcatactcgacaagatgttaagcaagat
gctctcactcttcccgagggaaaagtagtaaattattttgttccatcacattgctttgga
ggagaggcaaaagatgttggaacccggaatatggagtttgaatcaaaagaaaaagttcat
tgtccccctacccgtgtgatgattctgacagctgtgaaagaaatgaatgggaaaaaagga
gtttctattgtttccatctacaagtatgtcagttcaatatacaaatatgacgtgcaacgc
aataggagtcttctgaagcggatgctgagaagtttgatttttgaaggtcttgtgagacag
attaaaggtcatggtttttctggaacttttacattgggaaagaattacaaggaagacaat
acatgggataaaacaaaaaaacaggtaataggaagtccaaaaaaacatcagaaagaaacc
agaaaatcagggaacaaggacacagattctgaatatttgccatcaaacacctctgacgat
gatgatgatgatccttattattattattataaagccaggaagaactataataagttgaga
aaaaagcctattttctgcacacaaaaaagaaaaagtcagcctaaattcagtcctaattcc
caagatgacggtccagcaaccagtgactctgggataatggatgtgaccatgtctgagagt
acttgtgaaacaaaggaagaaggtgcgtctccagcccctgccggcagtgccgggccacac
tctgatagccaggggcccccagacgcctctgactatcgcttcgagtgcatctgtggtgaa
ctgaaccaaacagactgcaaggcgcgtgttcagtgcctgcgctgccgcctgtggcaacat
gcaaaatgtgtgaattacgaagagaagaatctcaaaattaagcctttttactgtccccac
tgcctggttgcaatggaaccagtatcttcaagagcaactctgatcatctcgccaagctct
atctgtcaccagtgggtggaagaaatcaataggcacgtgaaatcatcgtcccttcacgtc
ttggtgtatcaaggagtgaagaaacatggttttttacagcctgattttttggccgaacag
gatatagttatcattacctatgacgttcttcgttcggaactaaactacgtcgatattcct
catagcaacagcgaggatggacgtcgtctgcgcaaccagaagcgctacatggccattccc
agccccctggtggctgtggagtggtggaggatctgcctggatgaagctcagatggttgag
tgtcctacagtaaaagctgctgaaatggcccggcgtttgactgggattaaccgatggtgt
gtcagtggcactccagttcagagaggattggaggatctttttgggttagtggtctttctg
ggcattgagccttattgtgtcaaacactggtggattcgacttctttatcagccctactgc
aagaagaaccctcagcccctctacagctttattgccaagatactctggaggtctgcaaag
aaagatgtcattgaccaaatccagataccccctcaaactgaagaaatacactggctccac
ttttctccagtggaaagacacttctatcatcgtcagcatgaggtttgctgccaggacgca
gtggtgaagcttagaaagatttccgactgggctctgaagctcagtagcctggacaggagg
accgtcacctccatcctctacccgttgctgaggctccggcaggcctgctgccacccacag
gccgtgcgtggggagttcttgccactccaaaaaagcaccatgaccatggaagagctgctg
acatctctgcagaagaaatgtgtgactgagtgtgaagaagcacatcgccagctagtttgt
gccctcaatggcttagcaggcgtccatatcattaaaggtgaatatgccgcagcagtagaa
ctatacagagaagtgttgcgctcatctgaggaacacaaaggaaaactcaaaactgattca
cttcagagacttcatgctacccataacttgatggaattgttgacggccaaacacccaggc
atacctcctaccttacgagatggcaaactggaggaagaggccaaacaactgcgagagcac
tacatgagcaagtgcaacacagaagttgctgaagcccagcaggcgttacagcctgtgcag
cagaacatccgtgagctccagagaaagattcatatgaattctccttggtggctgaatgtg
atacatagagcattggaatttgctattgatgaagaacttgttcaacgagtgagaaatgaa
ttaactagcaactacaagcaacaaactgacaagctttccatgtcagagaagttccgcgac
tgcagaggtcttcagttcttacttaccacacaaatggaagagctacataaattccagaag
ctggtaagagacgctgtgagaaacctagagggacctccgtctcggagcgttattgaatct
gcaacaatctgccatctccgacccgttaggcttccgctcaactgctgtgtcttttgcaaa
gctgatgaattgtttacagaatatgaatcaaaactgttttctaacacagtcaaaggccag
acagcgatatttgaggagatgatagaagatgaagaaggactggtagatgatcgagcacct
accaccactcgtggtctgtgggcaacaagcgagacagagcgatccatgaaagcaatcctg
tcatttgcaaaatcacatagattcgatattgaattcattgatgaaggaagtattgcaatg
gacctgtttgaagcatggaagaaggagtataagttgcttcatgaatattggatggctctt
aggaaccgtgtgtctgctgtggatgagctcgccatggccacagaacggctgcgagtgcgc
gagccgagggagccgaagcccagtccgcctgttcaccacatcattgagccgcaggaggtg
gaacaaaatcgtataaaactactaaatgataaagccatagctacatcacagcttcagaaa
aaactgggccagcttctttatctgactaacttggagaagtctcaagacagaacatctgga
ggcattaatccagaaccttgtcccatatgcgctcgacagctggggaagcagtgggcagta
ctaacctgtggacactgtttctgtaatgaatgtgtttctattatcatcgagcaatacagc
gtggggtctcaccgaagcgccatcaggtgtgccatctgccgccagactacttctcacaag
gaaatctcgtacgtcttcacctcagagaaagccagccaggaggaagacatccctgtcaag
ggtagccattctacaaaggtggaagctgtggtgagaactctgatgaaaatacagcttaga
gatccaggggccaaagcgctggtcttctccacgtggcaagatgtattagatattatttct
aaagccctcactgataataacatggaatttgcacagatcggtcgtgttaaaacatttcag
gagaacctttcagcatttaaacgtgatccgcaaatcaatattttgctgctacccctacac
acaggctctaatggattaaccatcattgaagccacacatgttctcttggtggagcccata
ctgaaccctgcccacgagcttcaggccataggacgggtgcaccgaattggacagacaaaa
cctactattgtacacagattcttaattaaagcaacaatagaagaaagaatgcaggcgatg
ctgaaaactgctgagcggagtcacaccaactcggccgggaagaactcggaggcctccgtc
ctcactgtcgccgacctcgcggacctgttcaccagagagacggaagagcgtgagtga
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integrated database retrieval system
