Ochotona princeps (American pika): 101516282
Help
Entry
101516282 CDS
T07609
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
opi
Ochotona princeps (American pika)
Pathway
opi01524
Platinum drug resistance
opi03430
Mismatch repair
opi05200
Pathways in cancer
opi05210
Colorectal cancer
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
101516282 (MSH2)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
101516282 (MSH2)
09162 Cancer: specific types
05210 Colorectal cancer
101516282 (MSH2)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
101516282 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
opi03400
]
101516282 (MSH2)
DNA repair and recombination proteins [BR:
opi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
101516282 (MSH2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_IV
MutS_II
MutS_I
MutS_III
AAA_27
Motif
Other DBs
NCBI-GeneID:
101516282
NCBI-ProteinID:
XP_012783992
LinkDB
All DBs
Position
2:complement(59928004..60036674)
Genome browser
AA seq
876 aa
AA seq
DB search
MAVQPKETLQLESAAEVGFVRFFQGMPEKPATTVRLFDRGDFYTAHGEDAQLAAREVFKT
QGVIKYMGPSGAKTLQSVVLSKMNFESFVKDLLLVRQYRVEVYKNRAGNKAAKENDWYLA
FKASPGNLAQFEDILFGNNDMSASIGVVGVKMSVIDGQRQVGVGYVDSLQRKLGLCEFPD
NDQFSNLEALLVQIGPKECVLPGGETAGDMGKLRQVIQRAGILITERKKMDFSSKDIYQD
LNRLLKGKKGEQTNSAVLPEMENQVAVSSLSAVIKFLELLSDDSNFGQFELTTFDFSQYM
KLDIAAVRALNLFQNIRAHWLNLVEAFVEDAELRQSLQEDLLRRLPDLNRLAKKFQRQAA
KLQDCYRLYQGINQLPNVIQALEKYEGWRQVSAESKVSCGFELLVENHEFLVKPSFDPNL
SELREVMDDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNKN
FSTVDIQKNGVKFTNSKLSSLNEEYTKNKSEYEEAQDAIVKEIVNISSGYVEPMQTLNDV
LAQLDAVVSFAHVSNGAPVPYVRPVILEKGQGRIILKGSRHACVEVQDEVAFIPNDVHFE
KDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQ
LKGVSTFMAEMLETSSILRSATEDSLIIIDELGRGTSTYDGFGLAWAISDYIATKIGAFC
MFATHFHELTALANHIPTVNNLHVTALTSEDTLTMLYQVKKGVCDQSFGIHVAELANFPR
HVIECAKQKAQELEEFQNVGDSQACDEMEPAAKKCCLEREQGEKIIQEFLLKVKQVPFTE
MSEENITIKLRQLKAEVIAKNNSFVNEIISRIKVTT
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcagccgaaggagacgctgcagctggagagtgcggccgaggtcggcttcgtg
cgcttcttccagggcatgccggagaagccggccaccacagtgcgcctcttcgacaggggc
gacttctacacggcgcatggcgaggacgcgcagctggccgcccgggaagtgttcaagacc
cagggggtcattaagtacatggggccgtcaggagcaaagactctgcaaagtgttgtgctt
agtaaaatgaattttgagtcttttgtgaaagatcttcttctagttcgtcaatatagagtt
gaagtttataaaaatagagctggaaataaggcggccaaggagaatgattggtatttggct
tttaaggcttctcctggcaatcttgcccagtttgaagatattctgtttggtaacaatgat
atgtcagcttccattggtgtggtgggggtcaagatgtctgtaattgatggtcaaaggcag
gttggagttggatatgtcgattccctccagaggaaactaggactgtgtgagttccctgat
aatgaccagttctccaacctcgaggcgctcttggttcagattggacccaaagaatgtgtt
ttgccaggaggagagactgctggagacatgggaaaactgaggcaggttattcagagagca
ggaattctgattacagaaaggaagaaaatggacttttcttctaaagacatttatcaggac
ctgaacaggttgttgaaaggcaagaagggagagcaaacaaatagtgctgttttgccagaa
atggagaatcaggttgcagtttcctcgttgtctgcagttatcaagttcttagaactctta
tctgacgattctaatttcggacagtttgagttgactacttttgatttcagccagtacatg
aagttggatattgcggcagtcagagcccttaacctttttcagaatattagagctcattgg
ttaaatttagtggaagcttttgtagaggatgcagaattgaggcagagtttacaagaagac
ttacttcgtcggcttccagatcttaaccgacttgccaagaaatttcaaagacaagctgca
aaattgcaagattgttatcggctttatcagggtataaatcagctccctaatgttatacag
gctctggaaaagtacgaaggctggaggcaggtgagcgcagaaagcaaagtaagctgtgga
tttgagttgctggtggaaaaccatgagttcctcgtgaagccttcatttgatccgaatctg
agtgagttaagagaagtaatggatgacttggaaaagaagatgcaatcaacactaataagt
gcagccagagatcttggcttggaccctggcaaacagataaaactagattctagtgcacag
tttggatattactttcgagtaacctgcaaggaagagaaagtccttcgtaacaataaaaac
ttcagtacagtagatatccaaaagaatggtgtcaaatttactaacagtaaattaagttct
ttaaatgaagaatataccaaaaataaatctgagtatgaggaggcccaggacgctattgtt
aaagaaattgtcaatatttcttcagggtatgtagaacccatgcagaccctcaatgatgtg
ttggctcagcttgatgctgttgtcagctttgctcatgtgtctaatggagctcctgttcca
tacgtaagaccagtcatcctggagaaaggacaaggaagaattatattaaaaggatccaga
catgcgtgtgttgaagtccaagatgaagttgcatttattcctaatgatgtacactttgaa
aaagataaacagatgttccacatcattacagggcccaatatgggaggtaaatcaacgtat
attcgccaaaccggtgtgatagtacttatggcccaaattgggtgttttgtgccatgcgag
tcagcagaggtgtccattgtggactgcatcttggctcgggtaggggctggtgacagtcaa
ctgaaaggagtgtccacgtttatggctgaaatgttggaaacttcttcgatcctcagatct
gcaactgaagattctttaataatcatagatgaattgggaagaggaacctctacctatgat
ggatttgggctagcatgggctatatcagattacattgcaaccaagattggtgctttttgc
atgtttgcaacccattttcacgaactcaccgccttggccaatcatataccaacagttaat
aatctacatgtcacagcattgacctctgaagacaccttaaccatgctttaccaagtgaag
aaaggtgtctgtgatcaaagctttgggattcacgttgcagagcttgccaatttccctagg
catgtgattgagtgtgcgaagcaaaaagcccaggaactggaggagtttcagaatgttgga
gactcacaagcgtgtgatgaaatggagccagcagccaaaaaatgctgcctggaaagagag
caaggtgaaaaaattattcaggagtttctactgaaggtgaagcaagtgccctttactgaa
atgtcagaagaaaacattacaataaagttaagacagctaaaagctgaagtgattgcaaag
aacaatagttttgtaaatgaaattatttcacgaataaaggttaccacatga
DBGET
integrated database retrieval system
