Ochotona princeps (American pika): 101516406
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Entry
101516406 CDS
T07609
Symbol
RP1L1
Name
(RefSeq) retinitis pigmentosa 1-like 1 protein
KO
K19538
retinitis pigmentosa 1
Organism
opi
Ochotona princeps (American pika)
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
opi03037
]
101516406 (RP1L1)
04812 Cytoskeleton proteins [BR:
opi04812
]
101516406 (RP1L1)
Cilium and associated proteins [BR:
opi03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
101516406 (RP1L1)
Cytoskeleton proteins [BR:
opi04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule-associated proteins (MAPs)
101516406 (RP1L1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCX
Motif
Other DBs
NCBI-GeneID:
101516406
NCBI-ProteinID:
XP_036352838
LinkDB
All DBs
Position
2A:32242324..32301222
Genome browser
AA seq
1484 aa
AA seq
DB search
MNGAPRDGQGPSHRECLLPSVARTLSATQVTPAKKITFLKRGDPRFAGVRLAVHQRTFKT
FNALMDELSQRVPLAFGVRSVTTPRGLHGLNALEQLQDGGCYLCSDKQPPKTPSRLQGRS
SSALQSWDPEGQVEVPGTTPSGKAPRAPRRMTLVRNGDQRFRQTVVLSHRNTRNLAAFLS
KASDLLHFPVKQVYTLSGKKVDSLQSLLHCPSVLVCAGDEAFRPLLMEDAARNGSEMLSG
LSSRGKNGSWGPESKQSVIHARTGSGSGQARRLALLSESRSHASLHHAQRGPTPIRHPQD
TPAAPGPLVAGDDVEKKVHLNEDGSLSVEMRVRFQLLGDEALLWSQRVGRAASREDCSSL
GEAEPFSCTWQGAPWGSSESGARASRALEAGFHGALGHSQQPEPSYEIWRNPLYTCQGEG
PAAEGRPGVAQHTRCRRRWSQGTTGRQRSLQDSASPASTVGCLENSELEFRSSSRTVEGD
LNTGSLQLASPVLRRGADDGLKERPSPCPEAVVPQSDCRRHESQGSEEALSDWSTSAGGT
HHLLHSPAAQQVPRPPDSVRASPCGSMPQLSEHEPMIRKLASGELRSPSLGSVYSQDPHG
YHPTPPEGRPCAKKPLRNLSHNSSGDPSADGWEADGGQQAEEKLKEGPLQLSGPGSAAVG
TTVKSSLNPVTGPRGMLEVKAARIGPDLKELEDDGSMTPSALPHASPDAVVREWLGNIPE
EPVLMRYEMDETSGMAREGPEGPQGSPADDQGQGGQLLLEVDISEHVAPKVEANGVLPGP
SDTGTESRQASPQGQGVAPAPASNSPVEVRALAGAAGALGRASCALPGRVSASTQIMKVL
MGAKPGRPSSLPELSDVVAKRLSHSAVALIACLARLHFFDKDPGSPVDKVSFTDSPQYQE
LLSISQTLWPRCSSGQDLLDPELQELPPHKPLPMSEDLTPTSSSGVDVSSGSGGSGEGSV
PCAMDSTGVPERTEPLLKSSSPRPGSRASGHAENVEEPQPGCSAASASSQIGTYATSKQA
AEGGSREQLVGNTLEQEIENVVQEDGVQLEETKEAENEEPHAGIQEQGLPMGTCLSRLGS
SEAGSAGSEGSQDDQRKHKEEARPCPSDRSENPSEPSQPLSKGPSKTSDSQRGPKSDPGL
EEPPTAAAAVGVSHKQAQVRPWLQLHAGEANRCTACRACLDPDPTWVSKLLKKMQMSFLT
HLADATAQLRARWNLQDDGLLDQMVAELEQDLGQRLQASTDKELRKIQSRAGRRAQGSGP
AWEVLRGQTSLQTEQRRHRLHGLRNLSALTDQTCGRGLFSLSLEDARSAPGEEFCPCEVC
LRKKVTPMVSPREAGAPIKKAFDLQQILKKKEGCPKGEAEAVATKRKLVTPKQEDPGVAM
DMSNSGQGASGRQELGSDVELGAKEGDGGEGSQRFSRDKEPPAGDAEGAGGQESGDSDAR
GQEEELGGGQEEQRPMLKGSEDEDSLEAAALEGTAPQQLSRRVM
NT seq
4455 nt
NT seq
+upstream
nt +downstream
nt
atgaacggcgccccaagggatggccagggcccaagccaccgagaatgcctcctgccctct
gtggcacgcaccctctctgccacccaggtcacacctgccaagaagataacctttctcaag
cgaggggacccccggtttgcaggggtgcgcctggcagtgcaccagcgcaccttcaagacc
ttcaacgccctgatggatgagctctctcagcgggtgcctcttgcctttggagtgcgctca
gtcaccacgccccgcgggctgcatggcctcaatgctctggagcagctgcaggatgggggc
tgctacctctgctcggataagcagccccccaagactcccagccggctgcaggggaggagc
tcctctgcccttcagtcgtgggatcctgaaggccaggtcgaggtgccgggaaccacgcct
tccgggaaggcccccagggctccaaggaggatgacactggttagaaatggggaccagcga
ttccgtcagacagtagttctcagtcacagaaataccagaaacctggcggcctttctcagc
aaagcctcggatctccttcactttcccgtgaagcaggtgtataccttgagtggaaaaaag
gtggactctctgcagagcctgctgcactgcccctccgtgttggtgtgtgctggggacgag
gccttcagacctctgctgatggaagatgctgcaagaaatgggtcagaaatgctatctggg
ctttcctcaaggggcaaaaacgggagctgggggccagaatccaagcagagtgtgatccac
gcaaggacggggtcgggcagtggccaggcacggcgacttgccctactgtcagagagtcgg
tcccacgcctctcttcatcatgcccagagaggccctactcccatcaggcaccctcaggac
acacctgctgcgcctggtcccttggtggctggcgatgacgtggagaagaaggtccacctg
aatgaggatggcagcctgtcggtggagatgagggttcgcttccagctgcttggagacgag
gcgctcctgtggtctcagagggtggggcgggctgccagcagggaggactgcagcagcctg
ggggaggcagaacccttcagttgcacttggcagggtgccccttggggctcctcggagtct
ggggcaagggcatccagagctctggaagcaggatttcacggtgccctgggccacagccag
cagccagaacccagttatgagatctggaggaaccccctatacacctgccagggggagggg
ccagctgcagaggggaggcctggggtggcccagcacacccgctgcaggcgccgctggagc
caagggactactgggaggcaaagaagcctccaggacagcgccagcccagcctccactgtt
ggttgcctggaaaactccgagctagaattccgaagcagctctaggaccgtagagggggac
ttgaacactggcagcctgcagctggcctctcctgtcctgcgtagaggagccgatgacggt
ctcaaagaaagacccagcccctgccctgaagcagtagtgccacagagcgactgcagaaga
catgagagccaaggctctgaagaggccctgtctgactggtccaccagcgctgggggcacc
caccacctgctgcactctccagcagcccagcaagtgcccaggccacctgacagtgtcagg
gccagcccctgtggatccatgccacagctatcagaacatgaaccgatgatcaggaaactg
gcctcgggggaactaagatctccttctctaggctctgtttattcgcaggaccctcatggg
taccaccccactccccccgaggggcggccctgtgctaagaagcccctgaggaacctcagc
cacaacagtagtggtgacccaagcgctgatggctgggaggcagatgggggccagcaggca
gaggaaaaactcaaggaggggcccctacagctctcaggccctgggtcagcagcagtaggg
acaacggtcaagagtagcctgaaccccgtaactgggcccagggggatgctggaggtgaaa
gccgccagaatagggccagacctcaaggagctggaggatgacggcagcatgacacccagt
gccctgccccatgcctcaccagacgctgtggtccgcgagtggctgggcaacatcccagag
gagcctgtgctcatgagatacgagatggacgagaccagcggcatggccagggagggtcct
gagggcccccaggggtcacctgctgatgatcagggtcaaggtggacagctgctgctggaa
gtagacatcagtgaacatgtggcacctaaagtggaggcaaacggagtcctcccaggcccc
agtgatacaggcactgaatcaagacaggcttctccccagggccaaggtgtagccccagct
ccagcatccaactcccctgtggaggtcagagctctggcaggagctgctggggccctgggc
agggcatcatgtgctctcccaggcagggtctctgcctccacccagatcatgaaggtgctg
atgggcgccaaaccaggcaggcccagcagcctccctgaactgtctgatgtggtagccaag
aggctcagccactctgctgtggccctcattgcctgtcttgccaggctccacttctttgac
aaagatccggggtcccctgtagacaaggtgagctttactgactccccccagtaccaggaa
ctgctgagcatctcacagaccctgtggccaagatgcagctctgggcaggatctgctggac
cctgagctccaagagctccctccacacaagcccttgcccatgtctgaggacctcacaccc
acgtcctcatctggagtggatgtcagcagtggctctggagggtcaggggagggcagcgtg
ccctgtgccatggacagcactggggttcctgagaggacagagccgctcctgaaaagctcc
tcccccaggcctggttccagagcatcggggcatgctgaaaatgtggaagagccacagcca
gggtgttctgcagcctctgctagctcccaaattggaacttatgccaccagcaagcaggca
gcagagggaggcagtagggaacagctggtgggcaacacgttggaacaggaaattgaaaat
gtagtgcaagaagatggggtgcagttagaggaaacaaaagaagcagaaaatgaagagcca
catgcgggcatccaggagcaaggacttcccatggggacatgcctcagcaggctggggtcc
tcagaggctggctctgcaggtagcgaaggcagccaggatgaccagagaaagcacaaggag
gaagcaaggccgtgtccctcggacaggagcgagaacccttcggaaccctctcaacctctc
agcaagggcccctcaaaaaccagtgatagccaaaggggccccaagtcagatccaggattg
gaagagccgcctacagcagcagcagcagtgggtgtgagccacaagcaagcccaggtcagg
ccgtggctgcagctgcatgcgggagaggcaaacaggtgcacagcttgcagggcatgcctg
gaccctgaccccacctgggtgtccaagttgctgaagaagatgcagatgtccttcctgacc
cacttggctgatgccacagcccagctgcgggctcgctggaacctgcaggatgacgggcta
ctggaccagatggtggctgagctggagcaggacctgggccagcggctccaggccagcact
gacaaagagctccggaagatccagagccgagccgggaggagagctcaggggtcagggcca
gcctgggaagtcctccggggccagacgtccctgcagacagagcagcgccgccaccgcctc
catggcctgcgcaacctctcagccctcacagatcagacctgtggcaggggccttttctcc
ctcagcctggaggatgcccgctcagcacccggggaggagttctgcccctgtgaagtgtgc
ttgcggaaaaaagtgacccccatggtttcccccagggaggctggagcgcccatcaaaaag
gccttcgacctgcagcagattctgaagaagaaagaagggtgccccaaaggggaggcagag
gcagtggccactaagaggaaactagtgaccccaaaacaggaggaccctggtgtggccatg
gacatgtccaacagtggccagggagccagtggaagacaggagctgggatcagacgtagag
cttggggccaaggagggtgatggaggtgagggtagccagaggttcagcagggacaaggag
cccccagctggagatgcagagggagctggtggccaggagagtggggacagtgatgccagg
ggccaagaggaggagctgggtggtgggcaagaggagcaaagacccatgctgaagggctct
gaggatgaggacagcttggaggctgccgctttggagggaactgctccccagcagctgagc
cgccgggtgatgtga
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