Ochotona princeps (American pika): 101516477
Help
Entry
101516477 CDS
T07609
Symbol
SLC6A13
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 2 isoform X1
KO
K05046
solute carrier family 6 (neurotransmitter transporter, GABA) member 13
Organism
opi
Ochotona princeps (American pika)
Pathway
opi04082
Neuroactive ligand signaling
opi04721
Synaptic vesicle cycle
opi04727
GABAergic synapse
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
101516477 (SLC6A13)
09150 Organismal Systems
09156 Nervous system
04727 GABAergic synapse
101516477 (SLC6A13)
04721 Synaptic vesicle cycle
101516477 (SLC6A13)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
opi02000
]
101516477 (SLC6A13)
Transporters [BR:
opi02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
101516477 (SLC6A13)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF
Motif
Other DBs
NCBI-GeneID:
101516477
NCBI-ProteinID:
XP_004599118
LinkDB
All DBs
Position
8A:4780082..4807154
Genome browser
AA seq
602 aa
AA seq
DB search
MDSTVSGAARNGETKAMYPVMEKAEEDGTLEREHWNNKMEFVLSVVGEIVGLGNVWRFPY
LCYKNGGGAFFIPYLIFLFTCGIPVFLLETALGQYTSQGGITAWRKICPIFEGIGYASQM
IVILLNIYYIIVLAWALFYLFSSFTVDLPWGSCHHEWNTEHCVEFQKTNGSLNVTSENAT
SPVIEFWERRVLKISDGIQHLGAVRWELALCLLLAWVICYFCIWKGVKSTGKVVYFTATF
PYLMLVVLLIRGVTLPGAAQGIQFYLYPNLTRLWDPQVWMDAGTQIFFSFAICLGCLTAL
GSYNKFHNNCYRDCLALCFLNSGTSFVAGFAIFSILGFMAQEQGVPISEVAESGPGLAFI
AYPRAVAMLPFSPLWACCFFFMVVLLGLDSQFVCVESLVTALVDMYPDVFRKKNRRELLI
LAVSVLSFLAGLLMLTEGGMYIFQLFDYYAASGMCLLFVAIFESICVAWVYGAGRFYDNI
QDMIGYRPWPLVKYCWLFFTPAVCTGTFLFSLIKYRPLTYNKKYTYPWWGDALGWLLALS
SMVCIPAWGLYKLSTLKGPFRERLRQLMCPAEDLAQRSQAGAPTSAVPKTSFLKVTELEC
QC
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atggacagcacagtctcaggcgcagccaggaatggagagacaaaagcaatgtatccagtc
atggaaaaggcggaggaagacggcacgctggagcgggagcactggaacaacaagatggag
tttgtgctgtctgtggttggggagatcgttggcttaggcaatgtttggagatttccttat
ctgtgctacaaaaacgggggaggtgccttcttcatcccctacctcatcttcctctttacc
tgtggcattcccgtcttcctcttggagacagcgctgggccagtacaccagccagggtggc
attacagcctggaggaagatctgtcccatctttgagggcatcggctatgcctcccagatg
attgtcatcctcctcaacatctactacatcatcgtcctggcttgggccctcttctacctc
ttcagcagcttcactgtcgacctcccctggggaagctgtcaccatgagtggaatacagag
cactgtgtggagttccagaagacgaacggctccctgaatgtcacctctgaaaacgccacc
tccccggtcatcgagttctgggagaggcgggtcctgaagatctccgacggcatccagcac
ctgggggccgtgcgctgggagctggccctgtgcctcctgctcgcctgggtcatctgctac
ttctgcatctggaagggtgtcaagtccacaggcaaggtggtgtacttcacagccacattc
ccttacctcatgctggtggtcctgctgattcgtggggtcacactgcctggagcggcccaa
ggaattcagttttacctgtacccaaacctcacccgcctgtgggacccccaggtgtggatg
gacgcaggcactcagatcttcttttcctttgccatctgtctaggctgcctgacagccctg
ggcagctacaacaagttccacaacaactgctaccgggactgcctggccctctgttttctc
aacagcggcaccagcttcgtggccggcttcgccatcttctccatcctgggcttcatggct
caggagcagggcgtgcccatttccgaggtggccgagtcagggcccggccttgcttttatc
gcctatccccgggcggtggcgatgctgcccttctctcctctctgggcctgctgcttcttc
ttcatggttgttctcctgggactggacagccagtttgtgtgtgtagaaagcctggtgaca
gcgctggtggacatgtaccccgacgtgttccgcaagaagaaccggagggaactgctcatc
ctggccgtgtctgtcttgtccttcctcgccggcctgctcatgctcacggagggcggcatg
tacatattccagctctttgactactatgcggccagcggtatgtgcctgctcttcgtggcc
atctttgagtccatctgtgtggcttgggtctatggagctgggcgcttctacgacaacata
caggatatgatcgggtaccggccatggccgcttgtcaaatactgttggctcttctttacc
ccggctgtgtgcacgggcaccttcctcttctccttgatcaagtacaggcccctgacctac
aacaagaagtacacgtacccgtggtggggcgacgccctcggctggctcctggccctctcg
tccatggtctgcatcccagcctggggcctctacaaactcagcaccctcaagggccccttc
agagagagactccgccagctcatgtgtccagctgaggacctggcccagcggagccaagca
ggggcccccacctctgctgtgcctaagacatcatttcttaaagtcacagagttggagtgt
cagtgctag
DBGET
integrated database retrieval system
