Ochotona princeps (American pika): 101516497
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Entry
101516497 CDS
T07609
Symbol
DDX21
Name
(RefSeq) nucleolar RNA helicase 2
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
opi
Ochotona princeps (American pika)
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
opi03009
]
101516497 (DDX21)
03036 Chromosome and associated proteins [BR:
opi03036
]
101516497 (DDX21)
Enzymes [BR:
opi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101516497 (DDX21)
Ribosome biogenesis [BR:
opi03009
]
Eukaryotic type
Pre-60S particles
Helicases
101516497 (DDX21)
Chromosome and associated proteins [BR:
opi03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
101516497 (DDX21)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
GUCT
Helicase_C
DD_DDX21-DDX50
ResIII
CMS1
Cas3-like_C_2
AAA_30
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
101516497
NCBI-ProteinID:
XP_004583494
LinkDB
All DBs
Position
18:complement(39843839..39862949)
Genome browser
AA seq
778 aa
AA seq
DB search
MPGRLRSDAGAESDLTMAKTEKTRKQVEKKDKKQKSKSSKTEELAEENEEIITPKTKKVK
KEAEPSEVEMNSPKSKKKKKQEEPSEDEVIPSKVKSKKKENLEKTIISPKTKKVLKSEEP
SEETGSPKPKKMKKDKEVNGDVEEASTKLKNGLPRAEADSNTSEESSSEPEKEVPVEQKE
GAFSNFPISEETVKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLV
EKLQGELQDRKRGRPPQVLVLAPTRELANQVSRDFSDITKKLAVACFYGGTPYGNQIERI
RNGIDILVGTPGRIKDHLESGKLDLSKLKHVVLDEVDQMLDMGFADQVEDILKVAYKKDS
EDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAA
VIGDVIRVYSGHQGRTIIFCETKKEAQELSQSVSIKQDAQSLHGDIPQKQREITLKGFRN
GAFGVLVATNVAARGLDIPEVDLVIQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQHKE
EYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEK
GAVEALAAALAQISGATSVDQRSLINSDVGFVTMILQCSIEMPNISYAWRELKEQLGEDI
DSKIKGMVFLKGKLGVCFDVPTAAVAEIQEKWHDSRRWQLSVATEQPELEGPREGFGGFR
GQRDGGRGFRGQRDGGRGFRGQRGGNRNSKGGQRRSGGGNNRTQNKGQKRSFSKAFGR
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atgccgggcagactccgcagtgacgccggggccgaatcagacttgaccatggctaagacg
gagaagacgcggaagcaggttgagaagaaagataaaaaacagaagtcaaaatctagtaaa
actgaagaattggcagaggaaaatgaagaaataattacccctaaaactaaaaaagttaaa
aaggaagcagaaccatctgaagttgaaatgaattctccaaagtccaaaaagaaaaaaaag
caagaggaaccatcagaagatgaggttattccttctaaagtaaaaagtaagaaaaaggaa
aatcttgagaaaacaattatttctcctaaaaccaaaaaagtactaaaaagtgaggagcca
tcagaagaaacgggttctcctaagcccaagaagatgaagaaagacaaagaagtgaatgga
gacgttgaagaggcgagcaccaagctcaagaatgggctcccccgtgctgaggctgattct
aacaccagtgaggagagtagcagtgagccagagaaggaagtgcctgtggagcagaaggaa
ggtgccttctctaattttccgatttctgaagagactgttaaacttctcaaagctcgtgga
gtgacattcctgtttcctatacaagcaaaaacatttcaccatgtctacagtgggaaggac
ttgattgcacaggcacggacaggaactggaaagacattctcctttgctatccctttggtt
gaaaaacttcagggagaactgcaagaccggaagaggggtcgtccgcctcaggtattggtt
cttgcccctaccagagagttggcaaatcaagtgagccgagacttcagtgacatcacaaaa
aaactggcagtggcatgtttttatggtggaactccttatggaaatcaaattgaacgcata
cggaatggaattgatatcctggttgggacaccaggtcgtatcaaagaccatctggagagt
ggcaagctagatctctccaaacttaagcatgttgttcttgatgaagttgaccagatgttg
gatatgggttttgctgaccaagtggaagatattttaaaagttgcctacaagaaagattct
gaagacaatccccaaacattgcttttttctgcaacttgccctcattgggtatttaatgtt
gctaagaaatacatgaaatctacatatgaacaggtggacctgattggtaaaaagacacag
aaaacagcaataactgtggagcatctagctatcaagtgccactggactcagagggcagca
gttattggagatgtgatccgtgtgtatagtggacatcagggacgcactatcatcttctgt
gagaccaagaaagaagcccaggagctgtcacagagtgtgtccattaaacaggatgcccag
tcattacatggtgacattccacagaagcaaagggaaatcactctgaaaggttttagaaat
ggtgcttttggcgttttggtggcaacaaatgtcgctgcacgtgggttggacatccctgag
gttgatttggttatacagagctgtccgccaaaggacgtggagtcctacattcatcgttct
gggcggacgggcagagctggaagaacaggtgtttgcatctgcttttatcagcacaaggaa
gaatatcagctagtacaagtggagcagaaagcgggaattaaattcaaacgaattggtgtt
ccttcagcaacagaaatcataaaagcttccagcaaagatgccatcaggcttttggactcc
gtgcctcccactgccatcagccacttcaagcagtctgctgagaagctgattgaggagaag
ggagccgtggaagccctggctgcagcgctggcccagatctcgggcgccacatctgtagac
cagcgctccttgatcaactcggatgtgggttttgtgaccatgattttgcagtgttcaatt
gaaatgccaaacattagttatgcttggagagaacttaaagaacaactgggcgaggatatt
gattccaaaataaagggaatggtctttctcaaaggaaagctgggtgtttgctttgatgtg
cctactgcagcagtcgcagagatacaggagaaatggcacgactcccggcgctggcagctg
tctgtggccaccgagcagcccgagctggaagggccccgtgaagggtttggcggtttcagg
ggccagcgggatggaggcagaggcttcaggggccagcgggatggaggcagaggtttcagg
ggccagcgaggaggcaacaggaactctaaaggaggacagcggcgctcaggaggtggcaac
aacaggacccaaaacaaaggccagaagaggagtttcagtaaagcatttggccgctga
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