KEGG   Ochotona princeps (American pika): 101516553
Entry
101516553         CDS       T07609                                 
Symbol
LSM2
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm2
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
opi  Ochotona princeps (American pika)
Pathway
opi03018  RNA degradation
opi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:opi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    101516553 (LSM2)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    101516553 (LSM2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:opi03019]
    101516553 (LSM2)
   03041 Spliceosome [BR:opi03041]
    101516553 (LSM2)
Messenger RNA biogenesis [BR:opi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     101516553 (LSM2)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     101516553 (LSM2)
Spliceosome [BR:opi03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    101516553 (LSM2)
 Complex C
  U2 snRNP components
    101516553 (LSM2)
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 101516553
NCBI-ProteinID: XP_012786243
LinkDB
Position
12:complement(29922980..29928094)
AA seq 157 aa
MHKGAASPRAFPSGLGASARVRDPAPPRPTRRLVFRFAPGLRPVAPGALLIAAWAAALGT
STMLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVK
NCFIRGSVVRYVQLPADEVDTQLLQDAARKEALQQKQ
NT seq 474 nt   +upstreamnt  +downstreamnt
atgcacaaaggagccgcgagtccgcgcgctttcccttcgggactcggagcctccgcgcgc
gtgcgcgacccagccccgccccgccccacgcgccggctcgtgttccggttcgcgcccggc
ctccggcccgtggccccgggcgctctcctgatcgcggcgtgggcagcggccctcggcacc
agcaccatgctcttctactcctttttcaagtcccttgtgggcaaggatgtggtcgtggaa
ctcaagaatgatttgagcatctgtgggaccctgcattctgtggatcagtatctcaacatc
aaactaaccgacatcagtgtcacagaccctgagaaatacccccacatgctgtcagtgaag
aactgcttcatccgaggctcggtggtgcgctacgtgcagttacctgcagatgaggttgac
acccagctgctgcaggacgccgcacggaaggaggccctgcagcagaaacagtga

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