Ochotona princeps (American pika): 101516591
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Entry
101516591 CDS
T07609
Symbol
NLRC3
Name
(RefSeq) NLR family CARD domain-containing protein 3
KO
K22614
NLR family CARD domain-containing protein 3
Organism
opi
Ochotona princeps (American pika)
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
opi04054
]
101516591 (NLRC3)
Pattern recognition receptors [BR:
opi04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
101516591 (NLRC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_6
NACHT
NLRC4_HD2
NOD2_WH
LRR_4
AAA_30
AAA_16
Viral_helicase1
LRR_12
Motif
Other DBs
NCBI-GeneID:
101516591
NCBI-ProteinID:
XP_004586757
LinkDB
All DBs
Position
6:complement(7616636..7629739)
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AA seq
1059 aa
AA seq
DB search
MKKQESQTGREPGQGLGGSSPAEQVKALVDLLAGRGSQGVQALQGPSRMPDSLMGPHGNE
SRLRRHREALLSRAAGGPPPRPGSLLLVEGLTDLQLREHDFAQVEATRGAQRPARTISLD
RLFLPLSRVSIPPRVSITVGVAGAGKTTLVRHFVHLWAGGQVGKEFSLVLPLAFRDLNTH
EKLSVDRLIRSTFPHIGERALAMSASVLLILDGLDECKTPLDFSNTMACTDPRVAVPVDH
LITNIIRGNLFPQVSIWITSRPGAAGQVPGGLVDRMTEIRGFSQEEVRECLEQMSPGDQS
LPGWALSQVQNDPALYLMCTVPAFCRLTGTVLGHVRCRGLASQEVALWPPRTLCELYAWY
FRMALGKEGQEKGKTSPRIEQVAQGSRKLVGSLGRLAFHGLVRRKYVFYEQDMKAFGVDL
LLLQGALCACFLRREETLATSVAYCFVHLSLQEFLAAAYYHGAARRAIFDLFTESGVSWP
RLGFLTHFRGATQRTMQAEDGRLDVFLRFLSGFLSPRVNALLAGSLLTPGEHEGSRAQAA
ELLQSCLLIPGATAGAQAVNVLRCLHELQCPELARGVQEALESGNLAGLSGPAHCAALAY
LLQVSDACAKEADLSPGLSQGVLQSLLPQLLYCRSLRLDTNQFQDPVMELLGSMLSGKDC
CIKKMSLAENQISNKGAKALARSLLVNRSLTALDLHSNSIGPQGAKALADALKINRTLIS
LSLQSNMIGDDGARSMAEALASNRTLSVLHLQNNTIGPTGAQRMADALKQNRTLKELMFS
SNSIGDGGAKALAEALKVNQGLESLDLQSNSISDAGVAALTGALCANCTLLHLSLRENSI
SVEGAQALAHALCTNSTLENLDLTANLLHDQGAQAIAAAMGGNRTLRSLHLQWNFIQAGA
ARALGRALQLNRSLTSLDLQENNLGDEGASAMAGALKVNTVLTALYLQVASIGAQGAQAL
GEALAVNTTLEVLDLRGNAIGVDGAKALAKALKVNASLRRLNLQENALGVDGAICMATAL
SENCGLRHINIQGNHIGESGARMISEAIKMNAPMCTVDM
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagcaggaaagccagacaggccgggagcctggccagggcctgggtggcagctcc
ccagcagagcaggtgaaagccctggtggacctgctggctggaaggggcagccaaggcgtg
caggccctgcaggggcccagcaggatgccggactctctgatggggccccacggtaacgag
tcaagactacgaaggcaccgtgaagctctgctgagcagggcagcaggtggccccccaccc
aggccgggcagtctcttgctggtggagggcctgacggacttgcagctgagggaacacgac
tttgcacaggtggaggccacccgcggggcccagcgccccgccaggaccatttccctagac
aggctgttcctgccactgtcccgggtgtccatcccaccccgtgtctccatcactgtcggg
gtggctggggcaggcaagaccacgctggtgaggcacttcgtccacctctgggctgggggc
caggtcggcaaagagttctcgctggtgctgcctttggccttccgggacctcaacacccac
gagaagctcagcgtggacaggctcatccgctccactttcccacacattggggaacgtgcc
ttggctatgtctgccagtgtcctcctcatcctggatggcctggacgagtgcaagacgccc
ctggacttctccaacactatggcgtgcacggaccccagggtggcggtgccggtggaccac
ctcatcaccaacatcatccggggcaacctctttccccaggtgtctatctggatcacctcc
aggcccggggctgccggccaggtccctggcggcttggtggaccggatgacagagatccgg
ggcttctcgcaggaggaggtgcgggagtgtctggagcagatgtctcccggggaccagagc
ctgcctggctgggccctgagccaggtgcagaatgacccggccctgtacctcatgtgtacg
gtcccagctttctgccggctcacgggcaccgtgctgggtcatgtgcgctgccgtgggctg
gcatcacaggaggtggcactatggcctcccaggaccctgtgtgagctctacgcttggtac
ttcagaatggccctgggcaaggaggggcaggagaagggcaaaaccagccctcgcatcgag
caggtagcccaaggcagccgcaagctggtgggcagtctgggccggctggccttccacggg
ctggtacggaggaagtacgtattctacgagcaggacatgaaggcgtttggtgtggacctg
cttctgttgcagggggccctgtgtgcttgctttttgaggcgcgaggagacgctggccaca
tcggtggcctactgctttgtccacctctccctgcaggagttcctggcagccgcctactac
cacggcgcggccaggagggccatcttcgacctcttcactgagagtggtgtgtcctggccc
cgcctgggttttctcacacacttcaggggagcgacccaacggaccatgcaggctgaggat
ggcaggctggacgtattcctgcgcttcctgtcaggcttcttgtctcccagggtcaatgct
ctgctggcaggctccctactgaccccaggcgagcacgagggctcccgggcacaggcagct
gagctcctgcagagctgcctgctgatccctggtgccactgccggagcccaggcagtcaac
gtcctgcgctgtctgcacgagctgcagtgcccagagctggcccgtggtgttcaggaggcc
ttggagagcggcaacctggctgggctgagcggccctgcacactgtgctgcactggcctac
ctgttgcaggtgtctgatgcttgtgccaaggaagctgacctgtccccaggcctcagccag
ggtgtcctgcagagtctgctgccacagctgctctactgccggagcctgaggctggacacc
aaccagttccaggatcccgtgatggagctgctgggtagcatgctgagtgggaaggactgc
tgcatcaagaagatgagcctggctgagaaccagatcagcaacaaaggggccaaagccctg
gccagatccctgctggtcaacagaagtctaacggctctggacctccacagtaactccatt
gggccacaaggagccaaggcattggcagatgctctgaagatcaatcgcactttgatttcc
ctcagcctccagagcaacatgattggggacgacggcgccagatccatggctgaggccttg
gcctccaacaggacactctctgtgctacacctgcagaacaacaccattggacccacagga
gcccagcggatggcagatgccctaaagcaaaacaggaccctgaaggaactcatgttctcc
agcaacagcattggcgatggaggtgccaaggccctggcagaggccctgaaggtgaaccag
ggcctggagagcctggacctgcagagcaactccatcagtgatgcgggtgtggcagcgctg
acaggggccctctgtgccaactgcaccctcctccacctcagcctgcgcgagaattccatc
agtgtcgagggtgcccaggctctggcccacgcactctgcaccaacagcaccctggagaac
ctggacctgacagctaacctgctccacgaccagggcgcccaggctatcgcggccgccatg
ggaggaaaccgcaccctcaggtccctacacctgcagtggaacttcatccaggctggtgct
gccagggccctgggccgagctctgcagctcaacaggagcttgaccagcctcgatttacag
gaaaacaatcttggcgacgaaggtgcctctgcaatggctggtgctctgaaggtgaacacg
gtgctcactgcactctatctccaggtggcctccattggtgctcagggggcccaggcccta
ggagaggccctggccgtgaacacaaccttggaggtcctcgacttacgagggaacgctatt
ggggtggacggagccaaagccctggctaaagctctgaaggtaaacgcgagcctccggaga
ctgaacctccaagagaacgccctgggtgtggacggagccatatgcatggccacagcattg
tctgaaaactgtgggctgcggcatatcaacatccaaggcaatcacattggcgaatctggc
gccaggatgatctcggaggccatcaagatgaacgctcccatgtgcacagtggacatgtga
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