Ochotona princeps (American pika): 101516598
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Entry
101516598 CDS
T07609
Symbol
PCDH19
Name
(RefSeq) protocadherin-19
KO
K16499
protocadherin delta 2
Organism
opi
Ochotona princeps (American pika)
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
opi04515
]
101516598 (PCDH19)
Cell adhesion molecules [BR:
opi04515
]
Cadherins
Protocadherins
101516598 (PCDH19)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
DUF4529
Motif
Other DBs
NCBI-GeneID:
101516598
NCBI-ProteinID:
XP_004590273
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Position
X
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AA seq
1179 aa
AA seq
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MESLLLPVLLLLAVLWTQAAALINLKYSVEEEQRAGTVIANVAKDAREAGFALDPRQASA
FRVVSNSAPHLVDINPSSGLLITKQKIDRDLLCRQSPKCIISLEVMSSSMEICVIKVEIK
DLNDNAPSFPAAQIELEISEAASPGTRIPLDSAYDPDSGSFGVQTYELTPNELFGLEIKT
RGDGSRFAELVVEKSLDRETQSHYSFRITALDGGDPPHLGTVGLSIKVTDSNDNNPVFGE
STYAVSVPENSPPNTPVIRLNASDPDEGTNGQVVYSFYGYVNDRTRELFQIDPHSGLVTV
TGALDYEEGHVYELDVQAKDLGPNSIPAHCKVTVSVLDTNDNPPVINLLSVNSELVEVSE
SAPPGYVIALVRVSDRDSGLNGRVQCRLLGNVPFRLQEYESFSTILVDGRLDREQHDQYN
LTIQARDGGVPMLQSAKSFTVRITDENDNHPHFSKPYYQVIVQENNTPGAYLLSVSARDP
DLGLNGSVSYQIVPSQVRDMPVFTYVSINPNSGDIYALRSFNHEQTKAFEFKVLAKDGGL
PSLQSNATVRVIILDVNDNTPVITAPPLINGTAEVYIPRNSGIGYLVTVVKADDYDEGEN
GRVTYDMTEGDRGFFEIDQINGEVRTTRTFNENSKASYELIVVAHDHGKTSLSASALVLI
YLSPALDAQESMGSVNLSLIFIIALGSIAGILFVTMIFVAIKCKRDNKEIRTYNCSNCLT
ITCLLGCFIKGQNSKCLHCISVSPISEEQDKKAEEKVSLRGKRIAEYSYGHQKKSSKKKK
ISKNDIRLVPRDVEETDKMNVVSCSSLTSSLNYFDYHQQTLPLGCRRSESTFLNVENQNT
RNTSANHIYHHSFNSQGPQQPDLIINGVPLPETENYSFDSNYVNSRAHLIKRSSPATFDL
RAVCFVGAMVQVPPYSSTPFSFGWSSGAGVESDVGVAVTLGLGAEFEDPLQDGFFIRMFN
LLGPLASQSPCVKSFTRDFPYQNEGFHCREECRILGHSDRCWMPRNPMPTRSKSPEHVRN
IIALSIEATAADVEAYDDCGPTKRTFATFGKDVSDHPTEERPTVKGKRTVDVTICSPKVN
GAIREAGNGCEAISPITSPLHLKSPLPTKPSVSYTIALAPQARDLEQYVNNANNGPSRPS
EAEPRGADSEKVIHEVNPILKEGRDKESPGVKRLKDIVL
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atggagtcgctcctgctgccggtgttgctgctgttggccgttttgtggacgcaggcggct
gccctcattaacctcaagtactcggtggaagaggagcagcgcgctgggacagtgatagcc
aacgtggccaaggacgcgcgggaggcgggcttcgcgttggaccccaggcaggcttcggcc
ttccgcgtggtgtccaactcggctccgcacctggtggatatcaaccccagctccggcctg
ctgatcactaagcaaaagattgaccgagacctgctgtgccgccagagtcctaagtgcatc
atctctctcgaggtcatgtccagttcaatggagatctgtgtgattaaggtggagatcaag
gacttgaacgacaacgcccccagcttcccagccgcacagatcgagttggagatctcggag
gcagccagccctggcacgcgcatcccgttggacagcgcctacgatccagactcaggcagt
tttggcgtacagacgtatgagctcacccctaacgagctgttcggcctggaaatcaagacg
cgcggcgacggttcccgctttgctgaattggtggtggagaagagcctggaccgggagaca
cagtcgcactatagctttcgcatcactgccctcgacggcggcgacccgccgcacctgggc
actgttggcctcagcatcaaggtgaccgactccaatgacaacaacccggtgttcggcgag
tccacctatgcggtgagtgtgcccgagaactcacccccgaacacacctgtcattcgcctc
aacgctagcgacccagacgagggcaccaacggccaggtagtgtactccttctatggctac
gttaacgaccgcacacgtgagctcttccagattgacccacacagcggtctggtcactgtc
actggtgccctagactatgaagaaggccacgtgtatgaactggacgtgcaagccaaggac
ctggggcccaactccatcccagcacactgcaaagtcaccgtcagcgtgctggacaccaat
gacaacccgccggtcatcaaccttctgtcggtcaacagcgagctcgtggaggtgagcgag
agcgcccccccgggctatgtgattgccctggtgcgggtgtctgatcgcgactctggcctc
aatggacgcgtgcagtgccgtttgttgggcaatgtgccctttcggctgcaggaatacgag
agtttctccactatcctggtggacggacggctggatcgcgagcaacatgatcagtataat
ctcacgattcaggcccgtgatggcggcgtgcccatgctgcagagtgccaagtcctttacc
gttcgcatcactgacgagaacgacaaccatccccacttctccaagccctactaccaagtc
atcgtgcaggagaacaacacgcccggcgcttatctgctctctgtgtcagctcgagaccct
gacctgggtcttaatggcagtgtctcctaccagattgtgccgtcgcaggtgcgggacatg
cctgtcttcacctacgtctccattaaccccaactcgggtgatatctatgcactgcgatcc
tttaaccacgagcagaccaaggcattcgaattcaaggtgctggccaaagacggtggcctg
ccctcacttcagagcaatgccacagtacgggtcattattctcgacgtcaatgacaatacc
ccggtcatcacagccccgcccctgatcaatggcactgccgaggtctacatcccgcgaaac
tctggcataggctacctggtgaccgttgtcaaagcagacgactatgacgagggcgaaaat
ggccgagtcacctatgacatgactgagggtgaccgtggcttctttgaaatagaccaaatc
aatggtgaagtcagaaccactcgcaccttcaacgagaactccaaagcttcctatgagctt
atcgtggtggctcacgaccatggcaagacatctctgtctgcctctgcactagtccttatc
tacttgtcacctgctctggatgcccaagagtcaatgggctccgtgaacctgtcactgatt
ttcattatagccctgggctccattgctggcatcctctttgtcactatgatcttcgtggca
atcaagtgcaagcgagacaacaaagagatccggacctacaactgcagtaattgtttaacc
atcacttgtctcctcggctgttttataaaaggacaaaacagcaagtgtctgcattgcatc
tcagtttctcccattagcgaggagcaagacaaaaaggcagaggagaaagtgagcctaagg
ggaaagagaatcgctgagtactcctatgggcatcaaaagaaatcaagcaagaagaaaaaa
atcagtaagaatgacatccgcctggtaccccgggatgtggaggagacagacaagatgaac
gttgtcagttgttcctccctgacctcctccctcaactatttcgactaccaccagcagacg
ctgcccctgggctgccgccgctctgagagcactttcctgaacgtggagaaccagaatacc
cgcaataccagcgctaaccacatctaccatcactctttcaacagccagggcccccagcag
ccagacctgatcatcaatggcgtgcctctgcccgagactgaaaactattcttttgactcc
aactacgtgaacagccgagcccatttaatcaaaagatcatcacctgcaacattcgatttg
cgggcagtctgctttgtaggagccatggttcaagtacctccttactcatccactcccttc
tccttcggctggagctcgggcgctggcgttgagagcgacgtcggtgtggcggtgactcta
ggcttaggagctgagtttgaagacccacttcaagatggcttcttcattcgcatgttcaac
cttctaggtcctttggcctctcagtctccttgtgtcaaatcatttaccagggattttcca
tatcagaatgaaggatttcactgcagagaagaatgtcgaattcttggccactctgaccgg
tgctggatgccccggaaccccatgccaacccgctccaagtcccctgagcatgtgaggaac
atcattgcgctgtccatcgaggctactgctgctgatgttgaggcttatgatgactgcggc
ccaaccaaacggacctttgcaacctttgggaaagatgtcagtgatcacccgactgaggag
aggcccaccgtgaaaggcaagaggactgttgatgtgaccatctgcagccccaaggtcaat
ggcgctatccgggaggcgggcaatggttgtgaggctattagccccatcacctcccctctc
cacctcaaaagccctctgcctactaagccttctgtgtcttacaccattgctctggctccc
caggcccgtgatctggagcagtatgtcaacaatgccaacaatggcccttctcgtccctct
gaagctgagccccgtggagctgacagtgagaaagtcatacatgaggtcaaccccattctg
aaggagggtcgtgacaaagagtcacctggcgtgaagcgtctgaaggatatcgttctgtaa
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