Ochotona princeps (American pika): 101516729
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Entry
101516729 CDS
T07609
Symbol
ZCCHC7
Name
(RefSeq) zinc finger CCHC domain-containing protein 7 isoform X1
KO
K12597
protein AIR1/2
Organism
opi
Ochotona princeps (American pika)
Pathway
opi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101516729 (ZCCHC7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
opi03019
]
101516729 (ZCCHC7)
03016 Transfer RNA biogenesis [BR:
opi03016
]
101516729 (ZCCHC7)
Messenger RNA biogenesis [BR:
opi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
101516729 (ZCCHC7)
Transfer RNA biogenesis [BR:
opi03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
101516729 (ZCCHC7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCHC
AIR2-like_ZnK4
Zn_ribbon_2
Motif
Other DBs
NCBI-GeneID:
101516729
NCBI-ProteinID:
XP_004581245
LinkDB
All DBs
Position
1A:complement(30720230..30953313)
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AA seq
537 aa
AA seq
DB search
MFGGYESIEAYEDELYREESSSELSIDSEVEFQLYSQVHYAQGLGNSSTEEVQKEKDSGN
SESLSNQPDQKNLIVLSDSEVIQLSDGSEVITLSDEDSIYRCKRKNVRGQAQEKTRGSLL
ACELAGKKCRRNIQALNPEQRSDGIQDVMVIEVSSSEEEESLISESDNVESWMLLGCEVD
DKDDGILLNLVGCENSVTEGEDSVNWFISDRDIEAQIGNNRASGRWTPRYYSVNKNVTCR
NCDRCGHLSKNCPLPQKVRACCLCSERGHLQYSCPARFCFDCSLPMSSTHRCLGRSSWRK
RCDRCDMLGHYADACPEIWRQYHLTIKPGPPRKPKTPSGQSSLVYCYNCAQKGHYGHECT
ERRMFSQTFPTSPFIFYYDDKYEIREREQRIKRKVKELQKNGDFPRPFKRPHMETSNKKP
MDTKKSQWKSNRWPRESKEIQKEPVNRTREQQKPRKTDRYHETDEDFPRGPKSHSSVGGF
KTHKSHKSLHRSSHFHKPREDKFPREGRPGKQKERRTEDDDSDNLFLIKQRKKKSKL
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atgtttggtggctatgaatcaatagaagcctacgaagatgaactttatcgtgaagagtca
tccagtgagctgagcattgacagtgaggtggaatttcagctgtacagtcaggttcactat
gcccaaggccttggtaattccagcacggaggaagtacagaaagaaaaggactctgggaat
tctgaatcactgagtaaccaaccagatcagaagaatttaattgtcctttctgatagtgaa
gtcattcagctatcagatgggtcagaggtcatcactttgtctgatgaagacagtatatat
agatgtaaaagaaagaatgttagaggccaagcacaagaaaagacccgtggttctcttctg
gcttgtgaattggctggcaagaaatgcaggcggaatatccaggcgttaaaccctgaacag
aggtcagatgggatccaagacgtcatggtgatagaagtcagttcaagtgaggaggaagag
agcctcatttccgaaagtgataatgtggaaagctggatgctgctgggatgtgaagtggat
gacaaagatgacggtatccttctcaaccttgtaggatgtgaaaactccgttactgaagga
gaagacagtgtaaactggttcatcagtgacagagacattgaggcacagataggtaataac
agagcttctggaagatggactccccgatactattcagtcaacaaaaatgttacgtgtaga
aattgtgacagatgtggccatttatcaaaaaactgcccgttaccacagaaagtccgtgcc
tgctgcctatgctccgagagaggacacctccagtattcctgtccagcgcggttttgtttc
gactgctctttgcctatgtcttctactcacagatgtcttggaagatcttcctggagaaaa
agatgtgatcgatgtgacatgttgggccactatgctgatgcttgcccagaaatctggagg
cagtatcacctaacgatcaaacctggaccacccagaaagccgaagactccttctggacag
tcatccttagtgtattgttacaactgtgcacaaaaaggccattatggacacgaatgcaca
gaaagacgaatgtttagccagacgtttccaacatctccatttatcttctattatgatgac
aaatatgaaattcgggagagagaacagagaataaaaagaaaagtaaaagaactccagaaa
aatggggatttcccaaggccattcaagagacctcatatggaaacatccaacaagaagccg
atggatacaaagaagagccagtggaaaagcaacaggtggcctcgagaaagcaaagaaatc
cagaaggaaccagtgaacaggaccagagagcagcagaagcctagaaaaactgacagatat
catgaaacagatgaggactttcccaggggcccaaagagccactcttctgttggtggtttt
aaaacccacaagtctcacaaatctttgcaccgttcatcacactttcacaagccaagagaa
gacaagtttcccagagagggcaggccgggcaagcagaaggagagacgcacagaagatgat
gacagtgataatttgtttcttattaagcaaaggaaaaaaaaatctaagctatga
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