Ochotona princeps (American pika): 101516816
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Entry
101516816 CDS
T07609
Symbol
ABCA1
Name
(RefSeq) phospholipid-transporting ATPase ABCA1 isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
opi
Ochotona princeps (American pika)
Pathway
opi02010
ABC transporters
opi04148
Efferocytosis
opi04975
Fat digestion and absorption
opi04979
Cholesterol metabolism
opi05417
Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
101516816 (ABCA1)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
101516816 (ABCA1)
09150 Organismal Systems
09154 Digestive system
04975 Fat digestion and absorption
101516816 (ABCA1)
04979 Cholesterol metabolism
101516816 (ABCA1)
09160 Human Diseases
09166 Cardiovascular disease
05417 Lipid and atherosclerosis
101516816 (ABCA1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
opi02000
]
101516816 (ABCA1)
Transporters [BR:
opi02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
101516816 (ABCA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DrrA1-3_C
AAA_23
Motif
Other DBs
NCBI-GeneID:
101516816
NCBI-ProteinID:
XP_004580992
LinkDB
All DBs
Position
1A:23886044..24006568
Genome browser
AA seq
2261 aa
AA seq
DB search
MASWPQLRLLLWKNLTFRRRQTCQLLLEVAWPLFIFLILISVRLSYPPYEQHECHFPNKA
MPSAGTLPWVQGIICNANNPCFRYPTPGEAPGVVGNFNKSIVSRLFSDARRLLLYSQKDT
SLKDIHKVLRTLQQIKNSNSSLKLQDFLADNETFSGFLHHNLSLPKLFVDNMLQANVSLH
KVFLQGYQLHLTSLCNGSKLEEVIPLDDQEVSELCGLPREKLDAAERVLRSNMDILKPIV
RELNSTSPFPTKQLAEATKALLDSLGALAQELFSMRSWSDMRQEVMFLTNANGSSSSTQI
YQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGGNGTEEDANTFYDNSTTPYCNDLMK
NLESSPLSRIIWKALKPLLIGKILYTPDTPATRQVMAEVNKTFQELAVFHDLEGMWEELS
PHIWTFMENSQEMDLVRTLLDSRGNEPFWEQKLDGLGWSAQDIVMFLAKHPEDIKSANGS
VYTWREAFNETNQAIQTISRFMECVNLNKLEPIATEVRLINKSMELLDERKFWAGVVFTG
ITPDSVELPPHVKYKIRMDIDNVERTNKIKDAYWDPGPRADPFEDMRYVWGGFAYLQDVV
EQAIIRVLTGTEKKTGVYVQQMPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKGIV
YEKEARLKETMRIMGLDNGILWFSWFISSLIPLLVSAGLLVVILKLGNLLPYSDPSVVFV
FLSVFAVVTITQCFLISTLFSRANLAAACGGVIYFTLYLPYVLCVAWQDYVGFTLKIFTS
LLSPVAFGFGCEYFALFEEQGVGVQWDNFFKSPVEEDGFNLTTSVSMMLFDAFLYGVMTW
YIEAVFPGQYGIPRPWYFPCTKSYWFGEESDEKKHPGSSQKGISEICMEEEPTHLKLGVS
IQNLVKVYRDGMKVAVDGLALNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYIL
GKDIRSEMSTIRQNLGVCPQHNVLFDMLTVEEHIWFYARLKGLSEKHVKAEMEQMALDVG
LPPSKLKSKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKYRQ
GRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKDVESSLS
SCRNSSSTVSYLKKEDSVSQSSSDAGLGSDHESDTLTIDVSAISNLIRKHVSEARLVEDI
GHELTYVLPYEAAKEGAFVELFHEIDDRLSDLGISSYGISETTLEEIFLKVAEESGVDAE
TSDGTLPARRNRRAFGDKQSCLRPFTEDDATDPNDSDLDPESRETDLLSGMDGKGSYQVK
GWKLTQQQFVALLWKRLLIARRSRKGFFAQIVLPAVFVCIALVFSLIVPPFGKYPSLELQ
PWMYNEQYTFVSNDAPEDMGTQELLKALTKDPGFGTRCMEGNPIPDTPCLAGEEEWVTAQ
VPQTIVDLFQNGNWTMENPSPACQCSSDKIKKMLPVCPPGAGGLPPPQRKQNTADILQNL
TGRNISDYLVKTYVQIIAKSLKNKIWVNEFRYGGFSLGVSNSQALPPSREVNEAIKQVKK
HLRLAKDSSADRFLNSLGRFMTGLDTKNNVKVWFNNKGWHAISSFLNVINNAILRANLQK
GENPTRYGITAFNHPLNLTKQQLSEVALMTTSVDVLVSICVIFAMSFVPASFVVFLIQER
VSKAKHLQFISGVKPVIYWLSNFVWDMCNYVVPATLVVIIFICFQQKSYVSSTNLPVLAL
LLLLYGWSITPLMYPASFVFKIPSTAYVVLTSVNLFIGINGSVATFVLELFTNNKLNNIN
DILKSVFLIFPHFCLGRGLIDMVKNQAMADALERFGENRFVSPLSWDLVGRNLFAMAVEG
VVFFLITVLIQYRFFIRPRPVNAKLPPLNDEDEDVRRERQRILDGGGQNDILEIKELTKI
YRRKRKPAVDRICVGIPPGECFGLLGVNGAGKSSTFKMLTGDTTVTRGDAFLNKNSILSN
IHEVHQNMGYCPQFDAITELLTGREHVEFFALLRGVPEKEVGKVGEWAIRKLGLVKYGEK
YAGNYSGGNKRKLSTAMALIGGPPVVFLDEPTTGMDPKARRFLWNCALSVVKEGRSVVLT
SHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIVVRIAGSNPDLKPVQEFFG
LAFPGSVLKEKHRNMLQYQLPSSLSSLARIFSILSQSKKRLHIEDYSVSQTTLDQVFVNF
AKDQSDDDHLKDLSLHKNQTVVDVAVLTSFLQDEKVKESYV
NT seq
6786 nt
NT seq
+upstream
nt +downstream
nt
atggcttcttggcctcagttgaggttgttgctgtggaaaaacctcactttccggagaaga
caaacatgtcagctcttgctggaagtggcctggcctctgtttatcttcttgatcctgatt
tctgtccggctcagctacccaccctatgaacagcatgaatgccactttccaaataaagcc
atgccctctgcaggaacacttccttgggttcaggggattatctgtaatgccaacaatcct
tgttttcgttacccaactcctggtgaggctcctggagtggttggaaactttaacaaatcc
attgtgtctcgcctcttctcagatgcccgaaggcttcttctgtatagccagaaagacacc
agcctgaaggacatacacaaagttttgagaacgttgcagcagatcaagaattccaactca
agtttgaagcttcaggattttctggcggacaatgaaaccttttctggcttcctgcatcac
aacctctctctccccaagctgtttgtggacaacatgctgcaggctaatgtcagcctccac
aaggtttttctgcaaggttaccagttacatttgaccagtctgtgcaatggatcaaaatta
gaagaggtgattccacttgacgaccaagaagtttctgagctttgtggtctaccgagggag
aaactggatgcagcggaacgagtgcttcgttccaacatggacatcctgaagcccattgtg
agagaactaaactccacatctcccttcccaaccaagcagctggctgaagccacaaaagct
ttgctcgatagtcttggggctttggcccaagagctcttcagcatgaggagctggagcgac
atgcggcaggaggtgatgtttctgaccaacgccaatggctccagctcctccactcagata
taccaggctgtgtcacggattgtctgtggccatcccgagggcggggggctgaagatcaag
tctctgaactggtatgaggacaacaattacaaagccctctttggaggcaacggcactgag
gaagatgctaacaccttctatgacaactccaccacgccttattgcaatgatctgatgaag
aatttggagtctagtcctctttctcgtatcatctggaaagctctcaagcctctgctcatt
ggaaagatcctgtatacacctgatactccagccacgagacaggttatggctgaggtgaac
aagacgttccaggagctggctgtattccatgatctggaaggcatgtgggaagagctcagt
ccccacatctggaccttcatggagaacagccaagaaatggaccttgtccggacactgctg
gatagcaggggcaacgaacccttttgggaacagaagttggatggcttaggttggtcagcc
caagacattgtgatgtttctggccaagcacccggaggatatcaagtctgctaatggctct
gtgtatacctggagagaagctttcaacgagacgaaccaggccatccagaccatttctcgc
ttcatggagtgtgtcaatctcaacaaactggaacccatagcaactgaagtccggcttatt
aacaagtccatggagctgctggatgagcgaaagttctgggccggagtcgtcttcactgga
attactccagacagtgttgagctgccccctcatgtcaagtacaagatccgaatggacatt
gacaatgtggagaggactaataaaatcaaggatgcgtactgggaccctggtcctcgggct
gatccctttgaggatatgcggtatgtctggggaggctttgcgtacttgcaggatgtggtg
gagcaagcgatcatcagggtgctgactggcactgagaagaaaactggtgtttatgtgcaa
cagatgccctatccctgctatgtagatgacatcttcctgcgggtgatgagccggtcgatg
cctcttttcatgacgttggcctggatttattctgtggctgtcatcattaagggcattgtg
tatgagaaggaggcacggctgaaggagaccatgcggatcatgggcctggacaatggcatc
ctctggtttagctggttcatcagcagcctcatccctctgcttgtgagtgctggcctgctc
gtggtcattctgaagttaggaaacctgctgccctacagtgaccccagcgtggtgtttgtc
ttcctgtctgtgtttgctgtggtgaccatcacgcagtgcttcttgatcagtacgctcttc
tccagagccaacctggccgcagcctgcgggggcgtcatctacttcacactgtacctgccc
tacgtcctctgtgtggcctggcaggactatgtgggcttcacactcaagatcttcactagc
ctgctgtctcctgtggcttttgggtttggctgtgaatactttgccctttttgaggaacag
ggtgttggggtgcagtgggacaacttctttaagagccccgtggaggaagatggtttcaat
ctcaccacttcggtctccatgatgctgtttgatgccttcctatatggggtgatgacatgg
tacatcgaggctgtctttccaggccagtatggcattcccaggccctggtatttcccttgc
accaagtcctattggtttggtgaggaaagcgatgagaagaagcaccctggttccagccag
aagggaatatcagaaatttgtatggaagaagagcccacccacttgaagttgggtgtgtcc
attcagaacctggtgaaggtttaccgcgatggcatgaaagtggctgtcgatggcttggca
ctgaatttctatgagggccagatcacctccttcctgggacacaatggagcagggaagacg
accaccatgtccatcctgactgggctcttccctcccacctcgggcacggcctatatcctg
gggaaggacatccgctcggagatgagcaccattcggcagaatctgggtgtctgtccccag
cacaatgtgctgtttgacatgctaactgtggaagagcacatctggttctatgcccgcctc
aaagggctctctgagaagcatgtgaaagcagagatggagcagatggccctggatgttggc
ttgccacccagcaagctgaagagcaaaacaagtcagctgtcaggtggaatgcagagaaaa
ctgtctgtggcattggcctttgtcggggggtccaaggttgtcattttggatgagcccaca
gctggtgtggacccttattcccgcaggggaatatgggagctgctgctgaaatacagacaa
ggccgcaccattattctttctacacaccacatggatgaagcggacatcctgggggacagg
atcgccatcatttcccatgggaagctgtgctgtgtaggctcctccctgttccttaagaac
cagctgggaacaggctactacctgaccctggtgaagaaagatgtggaatcctctctgagt
tcctgcagaaatagcagcagcactgtgtcatatctgaaaaaggaggacagtgtttctcag
agcagttctgatgctggcctgggcagcgaccatgaaagtgacacgctgaccatcgatgtc
tctgctatctccaacctcatcaggaagcatgtgtctgaagctcggctggtagaagacatt
gggcatgagctgacctatgtgctgccatatgaagctgctaaggaaggggcttttgtggaa
ctcttccatgagattgatgaccggctctcggacctgggaatctctagttatggcatctca
gaaactaccttggaagaaatatttctcaaagtggctgaagagagtggagtggatgctgag
acctcagatggtaccttgccagcaagacggaacagacgggcctttggagataagcagagc
tgtcttcgccctttcaccgaagacgatgccactgatccaaatgattctgacttagaccca
gaatccagagagacggacttgctcagcgggatggacggcaaaggctcctaccaggtgaag
ggctggaaactcacccagcagcagttcgtggcccttttgtggaaacggctgctgattgcc
agacggagtcgaaaaggattctttgctcagattgtcctgccagctgtgttcgtctgcatt
gccttggtgttcagcctgattgtaccaccctttggcaagtatccgagcctggagcttcaa
ccctggatgtacaatgagcagtacacatttgtcagtaatgatgctccagaggacatgggc
acccaggaactgttgaaggctctcaccaaagaccctggctttgggacccgatgtatggaa
ggaaacccaatcccagacacaccttgcttggcaggggaggaagagtgggtcactgcccaa
gttccccagaccattgtggatctcttccaaaatggcaactggaccatggagaacccctca
cctgcctgccagtgtagcagtgacaaaatcaagaagatgctgcctgtgtgtcctcccggg
gcaggggggctgcctcctccacaaagaaaacagaacactgcagacatccttcagaacctt
acaggaaggaacatctcggattacctggtgaagacgtatgtgcagatcatagccaaaagt
ttgaaaaacaagatctgggtgaatgagtttaggtatggtggtttctctctgggtgtcagc
aactcccaggcactccctccaagccgagaagttaatgaagccattaaacaagtgaagaaa
catttgaggctggccaaggacagctctgcagatcgatttctcaacagcttggggaggttc
atgacaggactggacaccaaaaataatgtcaaggtatggtttaataacaaaggctggcat
gccattagctctttcctgaatgtcatcaacaatgccattctccgggccaacctgcagaag
ggagagaatcctacccgatatggaattactgctttcaatcaccccctgaatcttaccaaa
cagcagctctcagaagtggctctgatgaccacatcagtggatgtcctcgtgtccatctgt
gtcatcttcgcaatgtccttcgtcccggccagctttgttgtgttcctcatccaggagcgg
gtcagcaaagcaaaacacctgcagtttatcagtggagtgaagcctgtcatctattggctg
tccaattttgtctgggacatgtgcaattatgtggtccctgcgacactggtcgtcatcatc
ttcatctgcttccagcagaagtcctatgtgtcctccaccaacctgcccgttctagccctt
ctactcttgctctatgggtggtcaatcacacctctcatgtacccggcttccttcgtgttt
aagatccctagcacagcctacgtggtactcaccagtgtgaaccttttcattggcatcaat
ggcagtgtggccacttttgtgctggagctcttcaccaacaataagctgaataacattaat
gatatcctgaagtctgtgtttttgatattcccacatttttgcctgggacgagggctcatt
gacatggtgaaaaaccaggccatggctgatgccctggaaaggtttggggagaatcgcttt
gtgtcaccactctcctgggacttggtaggacgcaacctcttcgctatggctgtggaaggg
gtggtgtttttcctcattaccgttctgatccagtacagattcttcatcagacccagacct
gtaaatgcaaagcttcctcctctaaatgatgaggatgaagatgtgaggcgagaaagacaa
agaattctagatggtggaggacagaatgacatcttggagatcaaagagctgacgaagatc
tatagaaggaaaaggaagcctgctgttgacaggatttgtgttggcattcctcctggcgag
tgctttgggcttctgggagtaaatggggctgggaaatcctccactttcaagatgctaact
ggagataccactgtcaccagaggagatgctttccttaacaaaaatagtatcttatcaaat
atccatgaagtacatcagaacatgggctactgccctcagtttgatgccataacagagttg
ctgactggaagagagcatgtggaattctttgccctcttgagaggagtcccagagaaagaa
gttggcaaggttggagagtgggcaattcggaagctgggccttgtgaagtatggagaaaaa
tatgccggtaactatagtggaggcaacaaacgcaagctctcaacagccatggctttgatt
ggtgggcctcccgtggtgttcctggatgaaccaaccacaggcatggatcccaaagcccgg
cgattcctgtggaattgtgccctaagtgttgtcaaggagggacgatcagtggtgcttaca
tctcatagtatggaagaatgtgaagctctttgcactaggatggcaattatggtcaatggg
aggttcaggtgtcttggcagtgtccagcatctgaaaaataggtttggagatggttatacg
atagttgtacggatagcaggatccaaccctgacttgaaacctgttcaagagttctttgga
cttgcctttcctggaagtgtattaaaagagaagcaccggaacatgttacagtaccagctt
ccatcttcattatcttctctagccaggatattcagcatcctctcccagagcaaaaagcga
ctccacatagaggactactctgtttctcagacaacacttgaccaagtatttgtgaacttt
gccaaggaccaaagtgatgatgaccacttaaaggacctgtcattacataaaaaccagacc
gtagtagatgttgcggttctcacatcttttctgcaggatgagaaagtgaaagaaagttat
gtatga
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integrated database retrieval system
