Ochotona princeps (American pika): 101517152
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Entry
101517152 CDS
T07609
Symbol
LRRC4C
Name
(RefSeq) leucine-rich repeat-containing protein 4C
KO
K07523
netrin-G1 ligand
Organism
opi
Ochotona princeps (American pika)
Pathway
opi04360
Axon guidance
opi04514
Cell adhesion molecule (CAM) interaction
opi04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
101517152 (LRRC4C)
04517 IgSF CAM signaling
101517152 (LRRC4C)
09150 Organismal Systems
09158 Development and regeneration
04360 Axon guidance
101517152 (LRRC4C)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
opi04515
]
101517152 (LRRC4C)
Cell adhesion molecules [BR:
opi04515
]
Immunoglobulin superfamily
NGL family
101517152 (LRRC4C)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
ig
LRR_1
V-set
LRR_14
LRR_9
Ig_2
LRRNT
Ig_6
LRR_LRWD1
Sp38
Herpes_gE_N
Syndecan
Motif
Other DBs
NCBI-GeneID:
101517152
NCBI-ProteinID:
XP_004585452
LinkDB
All DBs
Position
1:complement(92681391..92859906)
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AA seq
640 aa
AA seq
DB search
MLNKMTLHPQQIMIGPRFNRALLDPLLVVLLALQLLVVAGLVRAQTCPSVCSCSNQFSKV
ICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAF
NGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG
ELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQ
GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH
NPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAPVIVEPP
ADLNVTEGMAAELKCRASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQD
TGMYTCMVSNSVGNTTASATLNVTAATTTPFSYFSTVTVETMEPSQDEARTTDNNVGPTP
VIDWETTNVTTSLMPQSTRSTEKTFTIPVTDINSGIPGIDEVMKTTKIIIGCFVAITLMA
AVMLVIFYKMRKQHHRQNHHAPTRTVEIINVDDEITGDTPMESHLPMPAIEHEHLNHYNS
YKSPFNHTTTVNTINSIHSSVHEPLLIRMNSKDNVQETQI
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgttgaacaagatgaccttacatccacagcagataatgataggtcctaggtttaacagg
gccctacttgaccctctgcttgtggtgctgctggctcttcaacttctggtggtggccggt
cttgtacgggctcaaacctgcccctcggtgtgctcctgcagcaaccagttcagcaaggtg
atttgtgttcggaaaaacctgcgtgaggttccggatggcatttccacaaacacacgactg
ctgaacctacatgagaaccaaatccagatcatcaaagtgaacagcttcaaacacttgagg
cacctagaaattctgcagttgagcagaaaccatattagaaccattgaaattggggccttt
aatggtctggcgaatcttaacactttggaactctttgacaatcgtcttactaccatccca
aatggagcttttgtatatttgtctaaactgaaggagctttggctgagaaacaaccccatt
gaaagtatcccttcttatgcttttaacagaataccttctttgcgccgactagacttgggg
gaattaaaaaggctttcatacatctcagaaggtgcctttgaaggtctgtccaatttgagg
tatttgaaccttgccatgtgcaaccttcgggaaatccctaacctcacaccactcataaaa
ctagatgagctggatctttctgggaatcatttgtctgccatcaggcctggctctttccag
ggattaatgcaccttcaaaaactgtggatgatacagtcccagattcaagtgattgaacgg
aatgcctttgataaccttcagtcactagttgagatcaacctggcacacaacaatctaaca
ttactgcctcatgacctcttcacacccttgcatcacctagagcgaatacacttacatcac
aacccttggaactgtaattgtgacatactgtggcttagctggtggataaaagacatggct
ccctccaacacagcttgttgtgcccggtgcaacacacctcccaatctgaaagggaggtat
attggggaactcgaccagaattacttcacgtgctatgctcctgtgattgtggagccccct
gcagacctcaatgtcactgaaggcatggcagctgagctgaagtgtcgggcttccacatct
ctgacatctgtatcttggattactccaaatggaacagtcatgacacatggggcatacaaa
gtgcggatagctgtgctcagtgacggtacgttaaattttacgaatgtaacagtgcaagat
acgggcatgtacacatgtatggtgagtaattctgttggaaatactactgcttcagccact
ctgaatgttactgcagcaaccactactcccttctcttacttttccactgtcacagtagag
actatggagccttctcaggatgaggcacggaccacagataacaacgtaggccccactcca
gtgattgattgggaaaccaccaatgttaccacttctctcatgccacagagcacaaggtca
acagaaaagacattcacaatcccagtgactgacataaacagtggaattccaggaatagat
gaagtcatgaagactaccaaaatcatcattgggtgtttcgtggccatcacactcatggct
gcagtgatgttggtcattttctacaagatgaggaagcagcaccatcggcaaaaccatcat
gcccccacgaggactgttgagatcatcaatgtggatgatgagattacaggggacacgccc
atggaaagccacctgcccatgcctgctattgagcatgagcacttaaatcactataactct
tacaaatctcccttcaatcacacaaccacagttaacacaataaattcaatacacagttca
gtgcatgaaccgttattgattcgaatgaactctaaagacaatgtacaagagactcaaatt
taa
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