Ochotona princeps (American pika): 101517785
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Entry
101517785 CDS
T07609
Symbol
TAF5L
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
opi
Ochotona princeps (American pika)
Pathway
opi03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
101517785 (TAF5L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
opi03021
]
101517785 (TAF5L)
03036 Chromosome and associated proteins [BR:
opi03036
]
101517785 (TAF5L)
Transcription machinery [BR:
opi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
101517785 (TAF5L)
Coactivators
SAGA/TFTC/STAGA complex
101517785 (TAF5L)
Chromosome and associated proteins [BR:
opi03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
101517785 (TAF5L)
STAGA complex
101517785 (TAF5L)
TFTC complex
101517785 (TAF5L)
SAGA complex
101517785 (TAF5L)
SLIK complex
101517785 (TAF5L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
TFIID_NTD2
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_DCAF4
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_WDR19_1st
PROPPIN
PEP5_VPS11_N
eIF2A
Beta-prop_IP5PC_F
Mala_s_1-like
Ge1_WD40
WD_LRWD1
Nbas_N
vATP-synt_AC39
Motif
Other DBs
NCBI-GeneID:
101517785
NCBI-ProteinID:
XP_004578609
LinkDB
All DBs
Position
16:complement(41115434..41128467)
Genome browser
AA seq
589 aa
AA seq
DB search
MKRVRTEQIQMAVSCYLKRRQYMDSDGPLKQGLRLSQTTEEMAASFSVQSESGFANMVNG
APCQGELQQYEVQFGRLRNFLTDSDSQHSHEVMPLLYPLFVYLHLNLVQNSPKSTVESFY
SRFHGMFLQNASQKDVIEQLQTTQTIQDIHSNLKLRTFLDNKYVVRLQEDSYNYLIRYLQ
SDNNTALCKILTLHINLDVQPAKRTDYQLYASGSSSRSESNGLEPPDMPSPILQNEAALE
VLQESIKRVKDGPPSLTTICFYAFYNTEQLLNTAEISPDSKLLAAGFDNSCIKLWSLRSK
KLKSEPHQVDVSRIHLACDILEEEEDEDDSAGTEMKILRGHSGPVYGTRFLTDSSGLLSC
SEDMTIRYWDLGSFTNTVLYRGHAYPVWDLDISPYSLYFASGSHDRTARLWSFDRTYPLR
IFAGHLADVDCVKFHPNSSYIATGSTDKTVRLWSTQQGNTVRLFTGHRGPVLSLAFSPNG
KYLASAGEDQRLKLWDLASGTLFKELRGHTDNITSLNFSPDSSLIASASMDNSVRVWDIR
NAYCSTPADGSSSELVGVYSGQMSNVLSVQFMACNLLLVTGITQENQEH
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgagtgcgcaccgagcagattcagatggcagtgtcctgctacctcaaacgccgg
cagtacatggactcagacggtcccctcaagcaaggactgcggctgtctcagactaccgag
gagatggcggccagtttctcagttcaatcagaatctggttttgccaatatggtgaacgga
gccccttgccagggagaactccagcaatatgaagtacagtttggacgactgaggaatttt
ctcactgattctgattcacagcatagccatgaagtgatgcctctcctgtatcctcttttt
gtctacctccatctcaacctggtccagaacagtccgaagagcacagtggaaagtttttac
agccgcttccatggaatgtttctgcagaatgctagtcagaaggatgtcattgagcagcta
cagaccactcagaccatccaggacatccactctaacttaaagctccgaacattcctagat
aacaagtacgtggtccgtctccaagaagacagctacaactaccttatccgctacctccaa
agtgacaacaatactgccctgtgcaaaatcctcaccttacatattaatcttgatgtgcag
cctgcgaagagaacagactaccagctctatgccagcggtagctcttcccgcagtgagagc
aatggcttagagccccccgacatgcccagtcccattctgcagaatgaggctgccctggag
gtcttgcaggagagcattaagcgtgtcaaggacgggcctccttccctcactaccatctgc
ttctatgccttctacaacacagagcaactgttgaacactgcagaaatttcccccgatagc
aagctgcttgctgctgggtttgacaactcctgtataaaactttggagtttacgatccaag
aaattaaaatcagagccccatcaagtagacgtgtctcgcattcacctggcttgtgatatc
ctggaagaggaggaggatgaggatgatagtgcaggcacagagatgaagatcctgcggggc
cacagtggaccagtgtacggcacaaggttcctcacagacagctcagggttgctctcttgt
tctgaagacatgaccatcaggtactgggacctggggagcttcactaacactgtgctgtat
agaggacacgcctatcccgtgtgggacctggacatcagcccatacagcctgtactttgcc
agcggctcccatgaccgcacggccaggctatggtcatttgatcggacgtacccgctgagg
atatttgcaggacacctggcagatgtggactgtgtcaaattccaccccaattcaagctac
atagctacaggctccaccgacaagacagtccgactgtggagcactcagcaggggaacacg
gtgaggctgttcacgggccaccgcggccctgtactttctctcgccttttcccccaacggt
aagtacttggcatctgctggtgaagaccagaggttgaagctatgggacttggcatccggg
accctttttaaagaactgagaggccacacagacaacatcaccagcctcaacttcagtcca
gacagcagcttgatcgcctctgcctccatggacaactccgtgcgtgtctgggacatcagg
aacgcttactgcagcacgcctgccgacggctcctccagtgagcttgtgggcgtgtacagt
gggcagatgagcaacgttctgagcgtgcagttcatggcctgtaaccttcttctggtgact
ggaatcacacaagaaaatcaggaacattaa
DBGET
integrated database retrieval system
