Ochotona princeps (American pika): 101517883
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Entry
101517883 CDS
T07609
Symbol
FDFT1
Name
(RefSeq) squalene synthase
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
opi
Ochotona princeps (American pika)
Pathway
opi00100
Steroid biosynthesis
opi01100
Metabolic pathways
Module
opi_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
101517883 (FDFT1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
opi01006
]
101517883 (FDFT1)
Enzymes [BR:
opi01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
101517883 (FDFT1)
Prenyltransferases [BR:
opi01006
]
Terpene biosynthesis
Squalene/phytoene synthase
101517883 (FDFT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
SCC3_C
DUF4272
Motif
Other DBs
NCBI-GeneID:
101517883
NCBI-ProteinID:
XP_004579357
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All DBs
Position
2A:complement(31134615..31165618)
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AA seq
310 aa
AA seq
DB search
MEFLKCLSHPEEFYNLLRFRLGGRQKVIPKMDQDSLSSSMKTCYKYLNQTSRSFAAVIEA
LDGEMRHAVCIFYLVLRALDTLEDDMTISVEKKIPLLHNFHSFLYEPEWRYMESKEKDRQ
VLEDFPTVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQSVFN
FCAIPQVMAIATLAACYNNQQVFKGVVKIRKGQAVTLMMDATNMPAVKAIICQYMEEIYQ
RIPNSDPSSGKTRQIISSIRTQNLPNCQLISRSHYSPFYLSFVMLLAALSWQYLSTLSQV
TEDYVQTGEH
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atggagttcttgaagtgcttgagtcacccggaggagttctacaacctgctgcgcttccgg
ctggggggcagacagaaggtgatacccaagatggaccaggactcgctcagcagcagcatg
aaaacttgttacaagtatctaaatcagaccagtcgcagtttcgcagctgtcattgaggcg
ctggatggggaaatgcgccatgcagtatgcatattttatctggttctccgggctctagac
accctggaagatgacatgaccatcagcgtggaaaagaagattccactgttgcacaacttt
cactctttcctttatgaaccagagtggcgatatatggagagcaaggagaaggaccgacaa
gtgttggaggacttcccaacggtttggagcagatatgtcaagaagctgggggattttgct
aagccagagaatattgacttggctgtgcagtgcctgaatgaactgataaccaatgccctg
caccacatcccagatgtcattacctacctttcaagactcagaaatcagagtgtgtttaac
ttctgcgctatcccacaggtaatggccatcgctactttggctgcctgttacaacaatcag
caggttttcaagggggtcgtgaagattcggaaggggcaggcagtcaccctcatgatggat
gccaccaatatgccagccgtcaaagctataatatgccagtatatggaagagatttatcaa
agaatccccaactccgacccgtcctctgggaaaacccgacagattatctccagcatcagg
acacagaacctccccaactgccagctcatctcccggagccactactcgcccttctacttg
tcgtttgtcatgctcttggccgccctgagctggcagtacctgagcaccctgtcgcaggtc
acagaagactatgttcagactggagaacactga
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