Ochotona princeps (American pika): 101518068
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Entry
101518068 CDS
T07609
Symbol
RNF40
Name
(RefSeq) E3 ubiquitin-protein ligase BRE1B isoform X1
KO
K10696
E3 ubiquitin-protein ligase BRE1 [EC:
2.3.2.27
]
Organism
opi
Ochotona princeps (American pika)
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
opi04121
]
101518068 (RNF40)
Enzymes [BR:
opi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
101518068 (RNF40)
Ubiquitin system [BR:
opi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
BRE1 proteins
101518068 (RNF40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRE1B
CC_Bre1
zf-C3HC4
zf-C3HC4_3
BRE1
zf-C3HC4_2
EzrA
zf-RING_5
zf-RING_2
zf-RING_UBOX
zf-rbx1
ZapB
SpoIIE
Motif
Other DBs
NCBI-GeneID:
101518068
NCBI-ProteinID:
XP_004586948
LinkDB
All DBs
Position
6:23955307..23965549
Genome browser
AA seq
1001 aa
AA seq
DB search
MSGPGNKRAAGDGGSGPPEKKLNREEKTTTTLIEPIRLGGISSTEEMDLKVLQFKNKKLA
ERLEQRQACEDELRERIEKLEKRQATDDATLLIVNRYWAQLDETVEALLRCHESQGELSS
GAEAPGTQEGLVRVGTPLLEPGTSELRESLPMQLRPPLSEPALAFVVALGASSSEEVELQ
LQGRMEFSKAAVSRVVEVSDRLQRRVEELCQRVYSRGDSEPPSEVARARTRELGRENRRL
QDLATQLQEKHHRISLEYSELQDKVTSAETKVLEMETTVEDLQWDIEKLRKREQKLNKHL
AEALEQLNSGYYVSGSSAGFQGGQITLSMQKFEMLNAELEENQELANSRMAELEKLQAEL
QGAVRTNERLKVALRSLPEEVVRETGEYRLLQAQFSLLYNESLQVKTQLDEARGLLLATK
NSHLRHIEHMESDELGLQKKLRTEVIQLEDTLAQVRKEYEMLRIEFEQNLAANEQAGPIN
REMRHLISSLQNHNHQLKGDAQRYKRKLREVQAEIGKLRAQASGSTHSISSLGHPEDAGL
SAPVPGKEEGAPGPVGTPTSRKEMASAPSATTATTSLKKEELVPSEEDAQAVTPGAQGPS
SRSREPEARPKRELREREGPSLGPAPVASALSRADREKAKVEEAKRKESELLKGLRAELK
KAQESQKEMKLLLDMYKSAPKEQRDKVQLMAAERKAKAEVDELRGRIRELEERDRRESKK
IADEDALRRIRQAEEQIEHLQRKLGATKQEEEALLSEMDVTGQAFEDMQEQNGRLLQQLR
EKDDANFKLMSERIKANQIHKLLREEKDELGEQVLGLKSQVDAQLLTVQKLEEKERALQG
SLGGVEKELTLRSQALELNKRKAVEAAQLAEDLKVQLEHVQTRLREIQPCLAESRAAREK
ESFNLKRAQEDISRLRRKLEKQRKVEVYADADEILQEEIKEYKARLTCPCCNTRKKDAVL
TKCFHVFCFECVRGRYEARQRKCPKCNAAFGAHDFHRVYIS
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atgtctgggcccggcaacaaacgcgccgccggcgacgggggttcagggcccccagaaaag
aagctgaaccgcgaggagaaaaccaccaccacccttatcgagcccattcgtcttggaggc
atctcctccacggaggagatggacctgaaggtgctgcagttcaagaacaagaagctggcc
gagcgtctggagcagcggcaggcctgtgaggacgagctccgcgagcgcatcgagaagctg
gagaagcgccaggccaccgacgacgccacactgctcatcgtcaaccgctactgggcgcag
ctggatgagactgtggaagccctcctccgctgtcacgagagccaaggggagctgtcctca
ggggcagaggcgcctgggactcaggaggggctggtgcgggtcggcaccccgctcctagag
ccggggacctcggagctgagggagtccctgccaatgcagctgcggcctccactcagcgag
ccggccctggcctttgtggtggccctgggggccagcagcagtgaggaggtggagctgcag
ctgcagggccggatggagttctccaaggcagctgtgtcacgggtggtggaggtctcagac
cggctgcagcgccgagtggaggagctctgtcagcgagtgtacagccgaggggacagtgaa
cccccaagcgaagtggctcgggctcgcactcgggaactgggtcgtgagaaccggaggctg
caggacttggccacgcagctgcaggagaagcaccaccgcatctcgttggagtactctgag
ctccaggataaagtgacgtcggcggagaccaaggtgctagagatggagacgacggtggag
gacctgcagtgggacatcgagaagctccgcaagcgtgagcagaagctcaacaagcacctg
gcagaggccctggagcagctcaactccggctactatgtgtctgggagctctgcaggcttt
caggggggccagatcacgctcagtatgcagaagtttgagatgctgaatgcggagctggag
gaaaaccaggaattggccaacagtcgaatggcggagctggagaagctgcaggctgaactc
cagggagctgtgcggaccaacgagcgcctcaaggtagccctgcggagcctgcccgaggag
gtggtgcgggagacgggggagtaccgcttgctgcaggcccagttctcactgctctacaac
gagtccctgcaagtgaagacacagctggacgaggcacgggggctgctgctggctaccaag
aactcccacctgcggcacatcgagcacatggagagcgatgagctgggactgcagaagaag
ctgcgcacggaggtcatccagctggaggatacgctagcccaggtccgcaaggaatatgag
atgctgcgcatcgagttcgagcagaacctggcagccaacgaacaggcagggcccatcaac
cgggagatgcgccacctgattagcagtctccagaaccacaaccaccagctaaagggggat
gcccagcggtataagcggaagcttcgagaggtgcaggccgagattggcaagctccgggct
caggccagtggctccactcactccatttccagcttgggccacccagaggacgctggtctt
agtgccccagtccctgggaaagaagagggtgccccaggccccgttgggacccccaccagc
aggaaggagatggcttcagctcccagtgccactactgccaccacttcgttgaagaaagag
gagctggttccctctgaggaggacgcccaggctgtcactcctggggctcagggaccctcc
tcgcggagccgagaaccggaggccagacccaagcgggagcttcgggaacgagaagggccc
tctctggggcccgctcctgtagcttcagctctctccagggcggatcgggagaaggccaag
gtggaggaggccaagaggaaggagtcagaactgctcaagggtctccgtgctgagctcaag
aaggcccaggaaagccagaaggagatgaagctgctgctggacatgtacaagtcagcccca
aaggagcagcgggacaaggtgcagctcatggccgccgagcgcaaggccaaggctgaggtt
gatgagctgcggggccgcatccgggagctggaggaacgggatcggagggagagcaagaag
attgccgatgaggatgccctgcggcgcatccggcaggctgaggagcagattgaacatctg
cagcgcaagctgggtgccaccaagcaggaggaggaggctctcctgtctgagatggacgtg
acgggtcaggcctttgaagacatgcaggagcagaacgggcggctgctgcagcagctgcgg
gaaaaagatgacgccaacttcaagctgatgtccgagcgcatcaaggccaaccagatccac
aagctgctgcgcgaggagaaggacgagctgggcgagcaggtcctgggcctcaagtcccag
gtggatgcccagctgctgaccgtgcagaagctggaggagaaggaacgggccttgcagggc
agcctcgggggtgtggagaaggagctgacgctgcgcagccaggcactggagctcaacaag
cggaaggctgtggaagccgcccagctggctgaggacctgaaggtgcagctggaacacgtg
cagacacggctgcgcgagattcagccctgcctggccgagagccgggctgcccgtgagaag
gagagcttcaacctcaagagggcacaggaggacatctcgcggctgcggcgcaagctggaa
aagcaacggaaggtggaggtctatgccgacgctgatgagatcctccaggaggagatcaag
gagtacaaggcgcggttgacctgcccctgctgcaacacccgcaagaaggatgcggtcctt
accaagtgcttccacgtgttctgcttcgagtgtgtgcggggccgctatgaggcccgccag
aggaagtgccccaagtgcaacgctgcctttggtgcccacgacttccatcgcgtctacatc
agctga
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integrated database retrieval system
