Ochotona princeps (American pika): 101518200
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Entry
101518200 CDS
T07609
Symbol
MMS19
Name
(RefSeq) MMS19 nucleotide excision repair protein homolog isoform X1
KO
K15075
DNA repair/transcription protein MET18/MMS19
Organism
opi
Ochotona princeps (American pika)
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
opi03036
]
101518200 (MMS19)
03400 DNA repair and recombination proteins [BR:
opi03400
]
101518200 (MMS19)
Chromosome and associated proteins [BR:
opi03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
101518200 (MMS19)
DNA repair and recombination proteins [BR:
opi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
Other NER factors
101518200 (MMS19)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MMS19_C
MMS19_N
TOR1L1_N
HEAT_2
PDS5
HEAT
Motif
Other DBs
NCBI-GeneID:
101518200
NCBI-ProteinID:
XP_004580054
LinkDB
All DBs
Position
18:27206498..27238945
Genome browser
AA seq
1030 aa
AA seq
DB search
MAAVVALEAAAPPGALWGLVQDFVMGQQEGPAAQVAADVKSGSYTVLQVVEALGSFLENP
EPRTRARGIQLLSQVLLQCHSLLLEKEVVHLVLFYENRLKDHHLVIPSVLQGLRALSLCM
TLPSGLAVSVLKAIFQEVHVQSLPQVDRHTVYTIITNFMQIREEELKGLGADFTFGFIQV
MDGEKDPRNLLVAFRIVHDLISRDYSLGPFVEELFEVTSCYFPVDFTPPPNDPHGIQRED
LILSLRAVLASTSRFAEFLLPLLIEKVDSEILSAKLDSLQTLNACCAVYGQKELKDFLPS
LWASIRREVFQTASERVEAEGLAALHSLTACLSRSVLRADAEDLLDSFLSNVLQDCRHHL
CEPDMKLVWPSAKLLQAAAGASARACDHITSNTLPLLLEQFHKHSQSNQRRTILEMILGF
LKLQQKWSYEDKDERPLNALKDQLCSLVFLALSDPSTQLQLVGIRTLMVLGAQPGLLSSE
DLELAVGHLYRLSFLEEDFQSCRAAALEASGTLATLYPVAFSSHLLPKIAEELCTGESDV
AQQDGPTKCCRHLHCLQALSAVSTHPSLVRETLPLLLRHLGQMNKGNMVAGSNEVIAVCQ
SLQQVAEKCQQDPESCWYFHQTAIPCLLALAVQASMPENEPSVLSKVLLEDEVLVAMVSV
IGTATTHLNPELAAQSVSCIVPLFLDGNTSFLPENSFPSKFQPFQDGRPEQRRLVALLMA
FVCSLPREVEIPQLNQLMRELLEQSCCPGCPFSSTAAAKCFAGLLNKHPAGQQLDEFLQL
AVDTVEASLGSGPSRKEAFTLLLWVTKALVLRYHPLSSCLTTRLMGLLSDPELGPAAADG
FSLLMSDCTDVLTRAGHAEVRIMFRQRFFTDNVPALVQGFHAATQDVKPNYLKGLSHVLN
RLPKPVLLPELPTLLSLLLEALSCPDCVVQLSTLSCLQPLLLEAPQVMSLHVDTLVTKFL
DLSSSPSMAVRIAALQCMHALTRLPTSVLLPYKPQVIRALAKPLDDKKRLVRKEAVAARG
EWFLLGSPGS
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atggctgccgtcgtcgctctggaggcggcggcgcctccgggcgccctatggggcctcgtg
caagacttcgtcatgggtcagcaggagggccccgctgcccaggtggctgcagatgtgaaa
tctggcagctatacagtgttacaagttgtggaagcccttgggtcctttctagagaaccca
gaacccagaactcgggctcgaggaatccagcttttgtcacaggtgctgctgcagtgtcac
tccctgctgctggagaaggaagtggttcacctggtcctgttctatgagaatcgcctgaaa
gatcatcaccttgtcatcccatctgtcctgcaaggtttgagggcacttagcctgtgtatg
accctgccctccgggctggctgtctctgtacttaaagccatcttccaggaggtacatgta
caatccttgccacaggtggaccgacacacagtctacactatcattaccaacttcatgcaa
atccgggaagaagagctaaaaggccttggagctgacttcacctttggcttcatccaggtg
atggatggggagaaggacccccgtaatcttctggtagccttccgcatcgtccatgacctc
atctccagggattatagcctgggaccctttgtggaggagttgtttgaagtgacatcttgc
tacttccctgttgattttacccctccaccaaatgatccccatggtatccagagagaagat
ctcatcctgagccttcgagctgtgctggcgtctacatcaagatttgctgagttcctgctg
cccctgctgattgagaaggtggattctgagattctgagtgccaagctggattctctgcag
actctgaatgcttgctgtgctgtgtatggacagaaggagctgaaggacttcctccccagc
ctttgggcttctatccgcagagaggtgttccagacggccagtgagcgggtggaggccgag
ggcctggcggccctccactccctgactgcgtgtttgtctcgctctgtgctgagggctgat
gctgaggacctccttgactccttccttagcaacgtcctacaggactgcaggcaccacctc
tgtgaaccggacatgaaattggtgtggcccagtgccaaactgttgcaggcagctgcaggt
gcatctgcccgggcctgtgaccacatcaccagcaacacactacctttactgctggaacag
ttccacaagcacagccagagcaaccagcggcggacaatccttgaaatgatcctgggtttc
ctgaagctgcagcagaagtggagctatgaagacaaagatgaaaggcctctgaatgctctc
aaggaccagctgtgctccctggtgttcctggccctgtcagaccccagcactcagctccag
cttgttggcatccgtacactcatggtgttgggtgcccagccaggtctgttatcttctgag
gacttggaactggcggtgggtcacctatacagactgagcttcctggaggaggatttccag
agctgcagggcggcagcactggaagcatcaggcaccctagccacactctaccctgtggcc
ttcagcagccacctactgcccaagattgctgaggagctgtgtacaggagagtcagacgtg
gctcaacaggatgggcccaccaaatgctgccggcatctgcactgtcttcaagctctgtct
gctgtttcaacacatcccagtcttgtcagggagacactacctctgctgctgcggcacctt
ggccagatgaacaaaggaaatatggtagcaggatctaatgaagttattgccgtctgtcag
agcctccagcaggtggcagaaaaatgccagcaggaccctgagagttgctggtatttccac
cagacagccatcccttgcctgcttgccctggctgtgcaggcttccatgccagagaatgag
ccctctgttctgagcaaagtgctactggaggatgaggttttggtcgccatggtgtccgtc
atcggcactgccaccacccatctgaaccctgagttagctgcccagagtgtctcctgcatt
gtgcccctcttcttggatggcaacacctcctttctgccggagaatagtttcccaagcaaa
ttccagccattccaggatggccgcccggagcagaggcggctggttgcactgcttatggcc
tttgtctgctccctgcctcgagaggtggaaattcctcaactgaaccaactcatgcgggag
ctattggaacagagctgctgtccaggctgccccttctcctccacagctgctgccaagtgc
tttgcaggactcctcaacaagcaccctgcagggcagcaattagatgaattcctccagctg
gctgtggacacagtggaggcgagtctgggctccgggccatctcgtaaggaggccttcaca
ctgctgctgtgggtaacaaaggcacttgtgctaaggtaccatcctctcagctcctgcctt
acaacccggctcatgggccttctgagtgatccagaactaggcccagcagcagctgatggc
ttttctctgctcatgtctgactgcactgatgtgttgactcgcgctggccatgctgaagtt
cggatcatgttccgccagcggttcttcacagacaatgtgcctgctttagtccagggtttc
catgctgctacccaagatgtgaagccaaactacctgaagggcttgtcccatgtccttaac
aggctgcccaagcctgtgctcttgccagagctgcccacactcctctccttgctgttggag
gccctgtcctgccccgactgtgtggtccagctctccaccctcagctgccttcagcctctt
ctgctggaagccccccaggtcatgagtcttcacgttgacacccttgtcaccaagtttctg
gacctcagctccagcccttccatggctgtccggattgctgctctacagtgcatgcatgct
ctcactcgcctgcccacatcggtgttgctgccctacaaaccacaggtgatccgagcctta
gccaaacccctagatgataagaagagactggtgcgcaaagaggctgtggcagccagggga
gagtggtttctgctggggagccctggcagctga
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integrated database retrieval system
