KEGG   Ochotona princeps (American pika): 101518442
Entry
101518442         CDS       T07609                                 
Symbol
DDB1
Name
(RefSeq) DNA damage-binding protein 1
  KO
K10610  DNA damage-binding protein 1
Organism
opi  Ochotona princeps (American pika)
Pathway
opi03420  Nucleotide excision repair
opi04120  Ubiquitin mediated proteolysis
opi05161  Hepatitis B
opi05170  Human immunodeficiency virus 1 infection
opi05203  Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:opi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    101518442 (DDB1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    101518442 (DDB1)
 09160 Human Diseases
  09161 Cancer: overview
   05203 Viral carcinogenesis
    101518442 (DDB1)
  09172 Infectious disease: viral
   05170 Human immunodeficiency virus 1 infection
    101518442 (DDB1)
   05161 Hepatitis B
    101518442 (DDB1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:opi04121]
    101518442 (DDB1)
   03400 DNA repair and recombination proteins [BR:opi03400]
    101518442 (DDB1)
Ubiquitin system [BR:opi04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Adoptor protein
     101518442 (DDB1)
DNA repair and recombination proteins [BR:opi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      101518442 (DDB1)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      101518442 (DDB1)
SSDB
Motif
Pfam: CPSF_A Beta-prop_RSE1_1st Beta-prop_RSE1_2nd Beta-prop_RIG_2nd
Other DBs
NCBI-GeneID: 101518442
NCBI-ProteinID: XP_004599373
LinkDB
Position
1:complement(105193626..105223206)
AA seq 1140 aa
MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGENKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGI
IGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICF
VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPSHD
TDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS
QEPKALVSEWKEPQGKNISVASCNSNQVVVAVGRALYYLQIHPQELRQISHTEMEHEVAC
LDITPLGDSNGLSPLCAIGLWTDISARILKLPTFELLHKEMLGGEIIPRSILMTTFESSH
YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRKICYQEVSQCFGVLSSRIEVQDATGGTTALRPSASTQALSSSVSSSKLFSSSTAPHET
SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE
AEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGET
STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER
KTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH
NT seq 3423 nt   +upstreamnt  +downstreamnt
atgtcgtacaactacgtggtaactgcgcagaagcccaccgccgtgaacggctgtgtgacc
ggacacttcacttcagctgaagacttgaacctgctgattgccaaaaacacgaggttagag
atctatgtggtcaccgcagaggggcttcggcccgtcaaggaggtgggcatgtatgggaag
attgccgtcatggagcttttcaggcccaagggggagaacaaggacctgctgtttatcctg
acagcgaagtacaatgcctgcatcctggagtataagcagagcggtgagagcattgatatc
atcacacgggcccacggcaatgtccaggaccgcattggccgcccctcagagactggcatt
attggcatcattgaccccgagtgccggatgattggtctgagactctacgatggcctcttc
aaggtcattccactagatcgagacaataaagagctgaaggccttcaacatccgcctggag
gagttgcatgttattgacgtcaagttcctatatggttgccaagcacctaccatttgcttt
gtctaccaggaccctcaagggcggcacgtcaaaacctatgaggtgtcccttcgggagaag
gaattcaacaagggcccttggaaacaggaaaacgtagaagctgaagcctccatggtgatt
gcagtcccagagccctttggaggggccatcatcattggacaggaatccatcacttaccac
aatggtgacaagtacctggcgattgcacctcctatcatcaagcaaagcacaatagtgtgc
cacaaccgagtggaccccaatggttctcgatacctgctgggcgacatggaagggcggctc
ttcatgctgcttttggaaaaggaggaacagatggacggcaccgtcaccctcaaggatctc
cgtgtggaactccttggagagacctctattgctgagtgcttgacgtaccttgataatgga
gttgtctttgttgggtctcgcctgggtgactcccagcttgtgaagctcaacgttgacagc
aacgaacaaggctcgtatgtagtagccatggaaacttttactaatttaggacccattgtg
gatatgtgtgtggtggacctggagaggcagggccagggccagctggtcacttgctctggt
gctttcaaggaaggttccttgcggatcatccggaatggaatcggaatccatgaacacgcc
agcattgacttaccaggcatcaaaggcttgtggccgctgcggtctgaccccagccatgac
actgatgacactctggtgctctcttttgtgggccagaccagagttctcatgttaaatgga
gaggaagtggaggaaactgaactgatgggttttgtggatgatcagcagactttcttctgt
ggcaatgtggctcaccaacaacttatccagatcacttcagcatctgtgaggttggtctca
caggagcccaaagctctggtgagtgaatggaaggagcctcagggcaagaacatcagtgtg
gcctcctgcaacagcaaccaggtggtggtggctgtcggaagggccctctactacctgcag
atccaccctcaggagctgcggcagatcagccacacagagatggaacatgaagtggcctgc
ctggacatcaccccgttaggggatagcaatgggctctcccctctctgtgccattggtctc
tggacagacatctctgcccgcatcttgaagctgcccacttttgaattactgcacaaggag
atgctgggtggagagatcatccctcgctctatcctgatgaccacctttgagagtagccac
tacctcctttgtgccttaggagatggggcacttttctacttcgggctcaacattgagaca
ggcttgttgagtgaccgcaagaaggtgaccttgggcacccaacccacggtgttgaggact
ttccgttctctttctaccaccaacgtctttgcttgctctgaccgccccactgtcatctat
agcagcaaccataaattggtgttctccaatgtcaatctaaaggaagtgaactacatgtgt
cccctcaactcagatggctatcctgacagcctggcactggccaacaacagcaccctcacc
attggcaccattgatgagatccagaaacttcatattcgcacagttccgctctacgagtct
cccaggaagatctgctatcaggaagtgtctcagtgctttggggtactctccagccgcatt
gaagtccaagacgccactgggggcaccacggccctgaggcccagtgccagcactcaggcc
ctgtctagcagcgtcagctccagcaagctgttctccagcagcacagcgccgcatgagacc
tcctttggagaggaggtggaggtgcacaacctcctgatcattgaccagcatacctttgaa
gtgcttcatgcccaccagtttctgcagaatgagtatgccctaagcctggtctcctgcaag
ttgggcaaagatcccaacacgtatttcatcgtgggcacagccatggtataccctgaagag
gcagagcctaagcaaggacgcattgtggtcttccagtattcggatgggaaactacagact
gtggctgagaaggaagtgaaaggagctgtgtactccatggtggaatttaacggcaaattg
ttggccagcattaacagcacggtgcggctgtacgagtggacgactgagaaggagctgcgc
accgagtgcaaccactacaacaacatcatggctctgtacctgaagaccaagggcgacttc
atcctggtgggcgacctcatgcgctcagtgctgctgcttgcctacaagcccatggaggga
aactttgaagagattgctcgagactttaatcccaactggatgagtgcggtagaaatcttg
gatgatgacaatttcctgggagctgagaatgcatttaacttgtttgtgtgtcagaaggat
agtgctgccaccactgacgaggagcggcagcaccttcaggaggtcgggctgttccacctg
ggcgagtttgtcaacgtgttctgccacggctctctggtcatgcagaacctgggcgagact
tccactcccacccagggctcggtccttttcggcacagtcaatggcatgattggactggtg
acctcgctgtcagagagctggtacaacctgctactggacatgcagaatcgactgaataaa
gtcatcaagagtgtgggcaagattgagcactccttctggagatcctttcacactgagcgc
aagacagagccggccacaggctttatcgatggtgacctgattgagagtttcttggatatc
agtcgccccaagatgcaggaggttgtggcaaacctacagtacgatgatggcagtggcatg
aagcgagaggccaccgccgatgacctgatcaaggttgtggaggagctaactcggatccat
tag

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