Ochotona princeps (American pika): 101518504
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Entry
101518504 CDS
T07609
Symbol
IGHMBP2
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
opi
Ochotona princeps (American pika)
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
opi03009
]
101518504 (IGHMBP2)
03012 Translation factors [BR:
opi03012
]
101518504 (IGHMBP2)
Enzymes [BR:
opi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
101518504 (IGHMBP2)
5.6.2.5 RNA 5'-3' helicase
101518504 (IGHMBP2)
Ribosome biogenesis [BR:
opi03009
]
Eukaryotic type
Other ribosome biogenesis factors
101518504 (IGHMBP2)
Translation factors [BR:
opi03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
101518504 (IGHMBP2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
SMUBP-2_HCS1_1B
AAA_11
R3H
zf-AN1
AAA_30
AAA_19
nSTAND3
AAA_22
AAA_16
ResIII
DEAD
ABC_tran
AAA
SLFN-g3_helicase
PhoH
AAA_25
UvrD-helicase
UvrD_C_2
Motif
Other DBs
NCBI-GeneID:
101518504
NCBI-ProteinID:
XP_004598321
LinkDB
All DBs
Position
1:complement(112100826..112118671)
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AA seq
932 aa
AA seq
DB search
MASATVESFVTKQLELLELERAAEVEERRSWQESLSLKELQNRGVCLLKLQVAGQRTGLY
GRLLVTFEPRRCAPSAVLPGNSFTPGDIVGLYDAANEGSQLATGVLTRLTPSSITVAFDE
AHDFQLSLDRESSYRLLKLANDITYQRMKNPAQDIGPLAFFNTALDASQKEAVSFALSQK
ELAIIHGPPGTGKTTTVVEVILQAVRPYQPGLCRLPWDLLLALPVHLCPQGRSLRSLSHG
PRGLDEPRHVLGVTASPGLPSXARNTKSQEKREKSELRNELKLLRKELRAREEAAMVEGL
TSAHVVLATATGACPDGPLRVLPESHFDVVVIDECAQALEASCWIPLLRARKCILAGDHK
QLPPTTVCPRAALAGLSRSLMERLVEEHGASVVRMLTVQYRMHQAIAGWASEAMYGGQLT
AHPSVAGHLLRDLPGVAATEETGLPLLLVDTAGCGLFELEEDDQSKGNPGEVRLVCLHIQ
ALVEAGVRASDIGVITPYNLQVDLLQQSLAHRHPDLEIRSVDGFQGREKEAVILSLVRSN
RKGEVGFLAEDRRINVAVTRARRHVAIICDSRTVTGHPFLKTLLSHFTQHGDVRTAFEYL
DDIVPDHYSHESTQGHGQATQKPRDAATAAKKPTGGRRPGRKPGGKVPGPPSHSQASLNG
GRPRAVGSGGGLEHFRALLAEFVAGEETRLEFPASLSSHERLQVHQLAEELGLRHESSGE
GKARQITVSRRAEAGTGGPGRAQAGQPRGELRDQAQLDLQAPHLEGLQAKKGRPAENGEP
TKKELPAEKELPAEKGQPRLPGKKKKKEKGRPAGELCVEENLDALLAAAVKADNTCGFAK
CTASVATLGQLCQFCNRRYCLGHHLPEAHGCGEKARAHARQRVSREGVLYPGSGSKNRAL
DPARRAQLQKRLDKKLGELSSQRASKRKEQGT
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggccactgtggagagcttcgtgacgaagcagttggagctgctggagctcgag
agggccgcggaggtggaggagcgcaggtcctggcaggagagcctgtccctgaaggagctg
cagaaccggggcgtatgcctgctgaagctgcaggtggccggccagcgcacggggctctac
gggcggctgctggtcaccttcgagcccaggaggtgcgccccgagcgcggtgctgcctggc
aacagcttcaccccaggggacattgtggggctgtatgacgctgccaacgagggcagtcag
ctggccacgggcgtcctgacccgcctcaccccgagctccatcaccgtggccttcgacgag
gcccacgacttccagctgagcctggaccgagagagctcctaccggctgctgaagctcgcc
aacgacatcacgtaccagcggatgaagaatcctgcccaggacatcggcccccttgccttc
ttcaacacggccctggacgcctcccaaaaagaggcggtttcatttgcgctgtcccagaag
gagctcgccatcatccatgggccgcctggcacgggcaagaccacgaccgtggtcgaagtc
attctccaggctgtgcgcccctaccagcccggcctctgccgactgccctgggacctcctc
ctggcactgcctgtgcacctgtgtccccaaggaaggtcattaaggagcttgtcacatggg
ccccggggtttggatgagccacgccacgtgctgggggtgacggcctctcctggcctccct
tcgtaggcgagaaacaccaagagccaggagaagagagagaaaagtgagttgcggaacgag
ctgaagctgctgaggaaggaactgagggcgcgggaggaagcggccatggtggagggcctc
acctcggcccacgtggtccttgccactgccacaggtgcctgccctgacggccccctcagg
gtgctgcccgagagccactttgatgtggtagtcatcgacgagtgtgcccaggccctggag
gccagctgctggatcccactcctgagggcccggaagtgcatcctggccggggaccacaag
cagctgccgcccaccaccgtctgccccagggctgccctggcggggctgtcacgcagcctg
atggagcggctggtggaggaacacggcgccagcgtggtgcgcatgctgaccgtgcagtac
cgcatgcaccaggccatcgcgggctgggcctcagaggccatgtacggcgggcagctgacg
gcccacccctccgtggctgggcaccttctgcgggacctcccaggggtggctgccacggag
gagacgggcctccccctgctgttggtggacaccgccggctgtgggctgtttgagctggag
gaggatgaccagtccaaggggaaccctggtgaagtccgcctcgtgtgtttgcacatccag
gccctagtggaggccggcgtccgagccagcgacattggcgtcatcacaccgtacaacctc
caggtggacctgctgcaacagagcctggcacaccgacaccccgacctagagatccgctcc
gtcgacggcttccagggccgggagaaggaggcggtgatcctgtctcttgtgcgctccaac
aggaaaggtgaagtcggtttcctggctgaggaccggcggatcaacgtggccgtcacccgt
gcccggcgccatgtggccatcatctgtgactcgcgcacggtcactggccaccccttcctg
aagaccctgctgagccacttcacgcagcatggagacgtgcgaacggccttcgagtacctt
gacgacattgtccccgaccactacagccatgagagcacccagggccacggccaggccacc
cagaagccccgagatgccgccacagcagccaagaagcccacaggaggcaggcggcccggg
aggaagccgggcggcaaagttccagggcccccaagccactctcaagccagcctcaatgga
ggcaggccccgcgcagtggggagcggaggtggcctggagcacttccgggccctcctcgcc
gagttcgtggctggcgaggagacacgcttggagtttcctgcctccctcagttcccacgag
cggctgcaggtgcaccagcttgccgaggagctgggcctgaggcatgagagctctggtgag
ggcaaggcccgacagatcaccgtgagcaggagggccgaggctggcactggaggccctggc
cgtgcgcaggctgggcagccccgtggggagctgcgtgaccaggcacagctggatctgcag
gcgccacacctggaggggctgcaggccaagaaggggcggccagcagaaaatggagagccg
actaagaaggagctgccagctgagaaggagctgccagctgagaaggggcagccgaggctt
ccaggaaagaaaaagaaaaaagaaaaaggccggccggccggagagctgtgcgtggaggag
aacttggatgctctacttgcggctgccgttaaggctgacaacacctgcggctttgccaag
tgcacggccagcgtcgccaccctgggccagctctgccagttctgcaaccgccgctactgc
cttggccaccacctgcccgaggcccacggctgtggtgagaaggcccgtgcgcacgcccgg
cagagggtcagccgggagggagtgctgtaccctggcagcgggtccaagaacagggcgctg
gacccagcccggagggcgcagctgcagaagaggctggacaagaagctgggcgagctcagc
agccagagggcgagcaagaggaaggagcaggggacgtga
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