Ochotona princeps (American pika): 101518739
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Entry
101518739 CDS
T07609
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
opi
Ochotona princeps (American pika)
Pathway
opi04151
PI3K-Akt signaling pathway
opi04510
Focal adhesion
opi04512
ECM-receptor interaction
opi04518
Integrin signaling
opi04974
Protein digestion and absorption
opi05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
101518739 (COL2A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101518739 (COL2A1)
04518 Integrin signaling
101518739 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101518739 (COL2A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
101518739 (COL2A1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
101518739 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
opi00536
]
101518739 (COL2A1)
Glycosaminoglycan binding proteins [BR:
opi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101518739 (COL2A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
101518739
NCBI-ProteinID:
XP_004597906
LinkDB
All DBs
Position
8A:complement(29572264..29591011)
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AA seq
1490 aa
AA seq
DB search
MIRLGAPQTLVLLTLLLAAALRCQGRDAQEGGGCVQEGQRYNDKDVWKPEPCRICVCDTG
TVLCDDIICEDAKDCLSPEIPFGECCPICPTDLAPASGQPGPKGQKGEPGDIKDIVGPKG
PPGPQGPAGEQGPRGDRGDKGEKGPPGPRGRDGEPGTPGNPGPPGPPGRPGPPGPLGLGG
NFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSG
PMGPRGPPGPPGKPGDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDG
AKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPG
PVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGNPGSPGPAGASGNPGTDGIPG
AKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAG
PQGAPGPAGEEGKRGARGEPGGAGPVGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSG
LAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARG
QPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQG
APGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQG
ARGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEG
APGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAG
PPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATG
FPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPQGRAGDPGLQGPAGPPGEKG
EPGDDGASGADGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRG
PPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGVAGVKGDRGETGAVGAPGAPGPPGSPG
PAGPTGKQGDRGEAGAQGPMGPSGPAGARGIPGPQGPRGDKGESGEPGERGLKGHRGFTG
LQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETG
PAGPPGNPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADEAAGALRQHDADVDA
TLKSLNNQIESLRSPEGSRKNPARTCRDLQLCHPEWKSGDYWIDPNQGCTLDAMKVFCNM
ETGETCVYPNPASVPKKNWWSTKSQKQQHVWFGETINGGFHFSYGDSSLPPNTANVQMTF
LRLLSTEGSQNITYHCKNSVAYLDEASGNLKKALLLQGSNDVEIRAEGNSRFTYTVLQDG
CTKHTGKWGKTVIEYRSQKTSRLPIMDIAPMDIGGPEQEFGVDIGPVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcctcggggctccccagaccctggtgctactgacgctgctcctcgccgctgcc
cttcggtgtcagggccgggatgcccaggagggcggcggctgtgtgcaggaggggcagagg
tataatgataaggatgtgtggaagccggagccgtgccgcatctgtgtctgtgacacgggg
accgtcctgtgtgacgacataatctgtgaagacgccaaggactgcctgagccccgagatc
cccttcggagagtgctgccccatctgccccaccgacctcgcccccgccagtgggcaacca
ggaccaaaggggcagaagggagaacccggagacatcaaggatattgtaggacctaaagga
ccccctggacctcagggacctgcaggtgagcagggacccagaggcgatcgtggcgacaaa
ggtgaaaagggtccccctggaccgcgtggccgagatggagaacctggaacccctgggaac
ccagggccccccggccctcctggtcgccctggcccccctggcccccttggtcttggtgga
aactttgctgcccagatggctggaggttttgatgagaaggctggaggcgcccagatggga
gtgatgcaaggccccatgggtcccatgggacctcgaggaccacctggacctgccggtgcc
cctggacctcaaggattccaaggcaaccccggcgagcctggagagcctggtgtctctggt
cccatgggtcctcgcggccctcccgggccccctggcaagcctggtgatgatggggaagct
ggaaaacctgggaaatctggtgaaaggggtcctcctggccctcagggcgctcgaggtttc
ccaggaaccccaggccttcccggagtcaaaggtcacagaggctacccagggctggatgga
gccaagggagaagctggcgctcctggcgtaaagggtgagagcggttcccccggtgagaac
ggctctccaggccccatgggtccccggggccttcctggtgagagaggacggactggccct
gccggcgctgcgggtgctcggggcaacgacggccagccaggtcctgctggacccccgggt
cctgttggtcctgctggtggtcctggcttccctggtgctcctggggccaagggtgaagct
ggccccactggtgcacgtggccccgaaggtgctcaaggtcctcgtggtgaacctggcaac
cctggatcccctgggcctgccggggcctctggcaaccctggaacagatggaatccccgga
gccaaagggtctgctggtgctcctggcatcgccggtgctcccggcttcccagggcctcgt
ggtcctcctggtcctcaaggtgcaactggtcccctgggccccaaaggccaaacgggtgaa
cctggtattgctggcttcaaaggtgaacaaggccccaagggagaaccgggccctgctggt
cctcagggagcccctggtcctgcaggtgaagaaggcaaaagaggcgctcgtggggaacct
ggcggcgctggacctgtgggccccccgggagaaagaggtgctcctggcaaccgaggtttc
ccaggtcaggacggtctagcagggcccaagggagcccctggagagcgagggcctagtggc
ctggccggccctaaaggagccaacggtgaccccggccgccctggagagcctggccttcct
ggagcccggggtctcactggacgccctggtgatgccggtccccaaggcaaagtcggtccc
tcgggagctcctggcgaagacggtcgccctggacccccaggtcctcagggggcacgtggg
cagcctggtgtcatgggcttccctggccccaaaggtgctaatggtgagcctggcaaagct
ggcgagaagggacttcctggtgctcctggcctgagaggtcttcctggcaaagatggcgag
acaggtgctgcaggaccccctggccctgctggccctgcaggagagcgtggcgagcaagga
gctcctgggccttctggattccagggacttcctggcccacctggtcccccaggtgaaggt
ggaaaaccaggtgaccagggtgttccgggtgaagctggtgcccccggcctcgtgggtccc
aggggtgaacgcggattcccgggtgaacgtggctctccaggtgcccagggtcttcagggt
gcccgcggcctccctggtacccctggaacagatggccccaaaggagcatctggtcctgct
ggcccccctggagctcaaggacccccaggtctccaggggatgcctggtgagagaggagca
gctggcatcgctggacccaagggagacagaggtgacgttggtgagaaaggtcccgaggga
gctcccggaaaggatggtggtcgaggtttgactggtcccatcggcccaccgggccccgct
ggtgccaacggtgagaagggagaagtcggaccccctggtcctgctggaagtgcaggtgct
cgtggcgcgccgggtgagcgtggagagactgggccccctggacctgccggatttgctgga
ccacccggtgctgacggccagcctggtgccaagggagaacaaggagaagctggacagaaa
ggtgatgctggcgcccctggccctcagggtccctctggagcaccggggcctcagggtcct
actggagtgactggtcctaagggggcccgtggagcccaaggccccccgggagccaccgga
ttccctggagctgctggccgtgtcggacctcccggctccaatggaaaccctgggccccct
ggaccccccggtccttctggaaaagatggccccaaaggagctcgaggagacagcggtcca
caaggccgggccggcgaccctggcctccagggtcccgctggtccccctggcgagaaggga
gagccaggagatgatggtgcctccggtgccgatggccccccaggtccacagggtctggcc
ggtcagaggggcattgtgggtctgcccggacagcgtggtgagagaggattccccggcctg
cctggcccatcgggtgagcctggcaagcagggtgcacctggtgcgtctggcgatcgtggt
ccccctggccccgtgggtcctcctggcctgactggtcctgcaggtgaacccggaagagag
gggagccctggtgctgacggtccacctggcagagatggtgtagctggagtcaagggtgac
cgtggtgagactggtgctgtgggtgcccctggagcccctggaccccctggctctcctggc
ccggccggcccaactggcaagcagggagaccgaggggaagctggtgcacaaggtcccatg
ggtccctcaggaccagctggagcccggggcatccctggcccacaaggcccccgaggtgac
aagggagagtctggagagcctggcgagagggggctgaagggacaccgtggctttactggc
ctacagggcctgcctggccctcccggtccctctggagaccaaggtgcttctggtcccgct
ggcccttccggccccaggggtcctcctggccctgttggtccctcaggcaaagatggtgcc
aatggaatccctggccccattgggcctccaggtccccgtggacgttcaggagaaaccggc
cccgccggacctcctggaaatcccggaccccccggccctccaggaccccctggccccggc
atcgacatgtctgcctttgctggcctaggccagagagagaagggccccgaccccctgcag
tacatgcgggcagacgaggcggctggagccctgcggcagcatgatgccgacgtggacgcc
acactcaagtccctcaacaaccagatcgagagcctccgcagccccgagggctcgcgcaag
aaccctgcacgcacctgccgagacctgcagctctgccatcctgagtggaagagcggtgac
tactggattgaccccaaccaaggctgcaccttggacgccatgaaagttttctgcaacatg
gagaccggtgagacctgcgtctaccccaacccggcctctgtgcccaagaagaactggtgg
agcaccaagagccagaagcagcagcacgtgtggtttggggagaccatcaacggaggcttc
catttcagctacggagatagcagcctgcctcccaacaccgccaacgtccagatgaccttc
ctgcgcctactgtctactgagggctcacagaacatcacctatcactgtaagaacagcgtg
gcctacctggacgaagccagtggcaaccttaagaaggccctgctcctgcagggttccaat
gacgtggagatccgggccgagggcaacagcaggttcacctacactgtgctgcaggatggc
tgcacgaaacacactggtaagtggggcaagactgtcatcgagtaccgatcccagaagacc
tcgcgcctgcccatcatggacatcgcccccatggacattggagggcctgagcaggagttc
ggcgtggacatcgggcccgtctgcttcttgtaa
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