Ochotona princeps (American pika): 101518864
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Entry
101518864 CDS
T07609
Name
(RefSeq) ATP-dependent RNA helicase DDX19B isoform X1
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
opi
Ochotona princeps (American pika)
Pathway
opi03013
Nucleocytoplasmic transport
opi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101518864
03015 mRNA surveillance pathway
101518864
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
opi03019
]
101518864
Enzymes [BR:
opi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101518864
Messenger RNA biogenesis [BR:
opi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
101518864
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
101518864
NCBI-ProteinID:
XP_004584076
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All DBs
Position
5:complement(41584931..41603926)
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AA seq
479 aa
AA seq
DB search
MATDSWALAVDEQEAAAESLSNLHLKDEKIKPDANGAVVRTTANTENPDEEEKEDRAAQS
LLNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQE
NALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGK
VIEQMGRFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFV
LDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE
EETLDTIKQYYVLCSNRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQV
ALLSGEMVVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDN
ETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIAN
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgactcgtgggccctggcggtggatgagcaggaagcggcggctgaatcgttg
agcaacttgcatcttaaggacgagaaaatcaaaccagatgccaatggtgctgttgtcaga
actactgcaaatacagagaacccagatgaagaagagaaagaggacagagctgcccagtcc
ttgctcaacaagctgatcagaagcaacctcgtggataacacaaaccaagtggaagtcctg
cagcgggaccccaactcccccctgtactcagtgaagtcctttgaggagctccggctgaag
ccacagctactgcagggagtctacgccatgggcttcaaccgtccatccaagatccaggag
aatgctttgcctttgatgcttgctgaacccccacagaatttaattgcccagtctcaatcc
ggaactggtaaaacagctgcctttgtattggccatgctcagccaagtagaacctgcaaac
aaatatccacagtgtctctgcctgtcccccacatatgaacttgcacttcaaacgggaaaa
gtgattgagcagatgggcagattttaccctgagctgaagctagcctatgctgttcgtggc
aataaattggaaagagggcagaagatcagtgagcagattgtcattggcaccccagggacc
gtcctggactggtgctccaaactcaagttcattgaccccaagaagattaaggtgtttgtt
ctggacgaggctgacgtgatgatagccacgcagggccaccaggatcagagcatccgcatc
cagaggatgctgcccaggaactgccagatgctccttttctctgccacctttgaagactcg
gtgtggaagtttgcccagaaggtggtcccggacccaaatgtgatcaaactgaagcgcgag
gaggagacactggacaccatcaagcagtactacgttctgtgcagcaacagagatgagaag
ttccaggccttgtgcaacctgtacggggccatcaccatcgctcaggccatgatcttctgc
cacacccgcaaaacagccagctggctggcagcagagctctcaaaagaaggccaccaggtg
gccctgctgagtggcgaaatggtggtggagcagagggcagctgtgattgagcgcttccga
gaaggcaaagagaaggttctggtgaccaccaatgtgtgtgcccgtggtattgacgttgag
caggtgtctgtcgtcatcaactttgatcttcccgtggacaaggatgggaacccggacaac
gagacctacctgcaccggattgggcgcacgggccgctttggcaagaggggcctggccgtg
aacatggttgatagcaagcacagcatgaacatcctgaaccgaatccaggagcatttcaat
aagaagatagaaagattggacacagatgatttggacgagatagagaaaatagccaactga
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