Ochotona princeps (American pika): 101519115
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Entry
101519115 CDS
T07609
Symbol
VPS50
Name
(RefSeq) syndetin
KO
K23288
syndetin
Organism
opi
Ochotona princeps (American pika)
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
opi04131
]
101519115 (VPS50)
Membrane trafficking [BR:
opi04131
]
Protein recycling
Others
EARP complex
101519115 (VPS50)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
DcpS_C
Motif
Other DBs
NCBI-GeneID:
101519115
NCBI-ProteinID:
XP_004582579
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All DBs
Position
10:complement(33467000..33548694)
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AA seq
983 aa
AA seq
DB search
MQKIKSLMTRQGLKSPPESLSDLGALENLRVPGKEEFRELREQPCDPQAEQELINSIEQV
YFSADSFDVVKYELEKLPPVLNLQELEEYRDKLKKQQAAVSKKVADLILEKQPAYVKELE
RVTSLQTGLQLAAVICANGRRHLNIAKEGFTQASLGLLANQRKRQLLIGLLKSLRTIKTL
QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
LSKICKNFDVNHYTKVQQAYRLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNT
DTKFQKLQYKDLCTHVTPDSYIPCLADLCKALWEVMLSYYSTMEWHERHDGEETAAVAEG
SNTMGTEETNFDRGYIKKKLEHGLTRIWQDVQLKVKTYLLGTDLSIFKYDDFIFVLDIIS
RLMQVGEEFCGSKSEVLQESIRKQSVNYFKNYHRVYTVGSNLRSVMHFSMFCIECEAQSL
SDMSASCLFRSCLGSVLFAFTVIEFKFLEQSRSPSVSPSKQLASTSSKTVTLFEQYCSGG
NPFEVQANHRDDETEDVLASNGYESDEQEKSAYQEYDSDSDVPEELKRDYVDEQTGDAPV
KSVSRETLKSRKKSDYSLNKVNAPILTNTTLNVIRLVGKYMQMMNILKPIAFDVIHFMSQ
LFDYYLYAVYTFFGRNDSLESTGLGLSSSRLRTTLNRIQESLIDLEVSADPAATLTAAEE
RKEKVPSPHLSHLVVLTSGDTLYGLAERVVATESLVFLAEQFEFLQPHLDAVMPAVKKPF
LQQFYSQTVSTASELRKPIYWIVAGKAIDYEQMLLLMANVKWDIKEIMSQHNMYVDALLK
EFEQFNKRLNEVSKRVRIPLPVSNTLWEHCIRLANRTIVEGYANVKKCSNEGRALMQLDF
QQFLMKLEKLTDIRPIPDKEFVEAYIKAYYLTENDMERWIKEHREYSTKQLTNLVNVCLG
SHINKKARQKLLAAIDDIDRPKR
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaaatcaagtctcttatgacccgtcagggtctgaagagccccccggagagcctc
agcgacctcggtgcccttgagaatctccgggtccctggaaaggaggaattcagggaactc
cgtgagcagccctgtgacccacaagctgaacaagagctgattaacagcatcgagcaggtg
tatttttctgcagactcatttgatgttgttaaatatgaactggagaaactccctcctgtt
ctcaatttgcaagaattagaggagtacagagacaaactgaaaaagcagcaagctgccgtc
tctaaaaaagtggcagatttaatccttgaaaagcagcctgcctatgtgaaggaacttgaa
agagtcacctcgctgcagacagggcttcagctggccgccgtcatctgcgccaatggcagg
agacacttgaatattgcaaaagaaggtttcactcaagcaagtttaggcctccttgcaaat
caaaggaaacgtcagctgttgattggactcctgaagtcgctgagaacgatcaaaacattg
caaagaacagatgtacgcttaagcgagatgctggaggaggaagactatcctggagctatc
cagctgtgcctggaatgtcagaaagcagccagcactttcaagcactacagttgtataagt
gaactgaattcaaagctgcaagacactctagaacaaatcgaggaacagttggatgtggcc
ctttccaaaatctgcaagaattttgatgttaaccattataccaaggtccagcaggcttat
cgactacttggcaagacacagacagcaatggatcaacttcatatgcacttcactcaagcc
attcacaatactgtgttccaagttgtccttggctacgtggaactctgtgcgggcaacacg
gatacaaaattccagaaactgcagtataaagatctctgcacacatgtcacgccagacagc
tacatcccgtgccttgcggacctgtgcaaagccctctgggaagtcatgctcagttactac
agcactatggagtggcatgagaggcatgacggcgaggagaccgctgctgttgctgaaggg
agtaatactatgggtactgaagaaacaaattttgatcgtggctatataaaaaagaagtta
gaacatggacttacacgaatatggcaggatgtgcagttaaaagtgaaaacctacttgctt
ggaactgacttgtctatattcaaatatgatgatttcatctttgttttggacataatcagc
aggttgatgcaagttggagaagaattttgtggtagcaagtctgaagttctgcaggagtct
attcgaaagcaaagtgtcaattatttcaagaactatcatagagtttatactgttggttct
aaccttcgatctgtgatgcatttcagtatgttttgtatagaatgtgaggcccagtcgctc
tcggacatgtctgcctcctgcctcttcaggtcctgtttaggctcagttctctttgcattc
actgtcattgagtttaaattcctggagcagtctcgctccccatcagtttcacctagtaag
cagctggcatcaacttcttcaaaaacggtcaccttatttgagcagtactgcagtggtggc
aacccgtttgaagttcaggccaatcacagggatgacgaaacagaggatgtcctggcttct
aatgggtacgagtctgatgagcaagagaagagtgcctatcaggagtatgacagcgacagt
gacgttcctgaggagctcaagcgggactacgtggatgagcagacgggtgacgctcctgtg
aagagtgtttctcgagaaaccctaaaaagcaggaagaaatcagattacagtttaaataaa
gtgaatgcacctatcttaacaaatacaacattaaatgtaatcaggcttgttgggaaatac
atgcagatgatgaatattcttaagccaattgcctttgatgttatccatttcatgtcccag
ctgtttgattattacttgtatgcagtatacaccttttttggtcggaatgattcgttggaa
tcaacaggacttggccttagtagcagcagactgagaacgactctcaacagaatacaggaa
agcctcattgatcttgaagtttcagccgaccctgctgccactctcacagcggcagaggaa
agaaaggagaaggtgccgagcccacacctcagtcacctcgtggttttgacgtctggggac
acgttgtacgggttggcagaaagagtggtagccacagaatccttggtgttcttggctgag
cagtttgagttcctgcagcctcacttggatgctgtgatgcccgcagtcaaaaagcccttt
cttcagcagttctattctcagacagtctcaactgccagtgaactacgcaaacccatttac
tggattgtagctggtaaagccatcgactacgagcagatgctgctgctcatggccaatgtg
aagtgggacataaaggagattatgtcgcagcacaacatgtatgtggatgcgttgctgaag
gaatttgaacagtttaacaaaagattgaacgaagtttccaagagagttcggatacccttg
ccagtgtctaatactctttgggaacattgtattcgattggctaatagaactattgtggaa
ggatatgccaatgtcaaaaagtgcagcaatgagggtcgtgccttgatgcagttggatttt
caacagtttttaatgaagcttgagaagctaacagatattagacccattcctgataaagaa
tttgtggaagcctacattaaagcctactacctaactgagaatgacatggaacgctggatc
aaggaacatagggagtattcaacgaagcagctaaccaacctggtgaacgtttgcctggga
tcccatatcaataagaaggcaagacaaaaacttctagctgctatagatgacatagacaga
cctaaaagataa
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