Ochotona princeps (American pika): 101519289
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Entry
101519289 CDS
T07609
Symbol
PRDM4
Name
(RefSeq) PR domain zinc finger protein 4 isoform X1
KO
K12463
PR domain zinc finger protein 4 [EC:2.1.1.-]
Organism
opi
Ochotona princeps (American pika)
Pathway
opi04722
Neurotrophin signaling pathway
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09150 Organismal Systems
09156 Nervous system
04722 Neurotrophin signaling pathway
101519289 (PRDM4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
opi03000
]
101519289 (PRDM4)
Transcription factors [BR:
opi03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
101519289 (PRDM4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
zf-H2C2_2
Zn_ribbon_PRDM4
zf-C2H2
zf-C2H2_4
C2CH-3rd_BIRD-IDD
SET
zf-C2H2_16
zf-C2H2_jaz
zf-met
Zn_ribbon_Com
PyrI_C
Motif
Other DBs
NCBI-GeneID:
101519289
NCBI-ProteinID:
XP_004589625
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Position
4:11232337..11257576
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AA seq
804 aa
AA seq
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MNEMNLSPVGMEQLTSSSVSNALPVSGSHLGLAASPSHSAIPAPGLPVAIPNLGPSLSSL
PSALSLMLPMGIGDRGVMCGLPERNYTLPPPPYPHLESSYFRTILPGILSYLADRPPPQY
IHPNSINVDGNTALSIANNPSALDPYQSSGSVGLEPGIVSIDSRSVNTHGAQSLHPSDGH
EVALDTTIAMENVSRVTSPISTEGMAEELAMDGVAGEHPQIPSGSRSHEPLSVDSVSSSL
AADAVGHGAVMPMHGNGLELPVVMETDHISSRVSGLSDSALGDSIHTVAMSTNSVSVALS
TSHNLASLESVSLHEVGLSLEPVAVSSITQEVAMGTGHVDVSSDSLSFVPPSLQMEDSNS
NKENMATLFTIWCTLCDRAYPSDCPDHGPVTFVPDTPIESRARLSLPKQLVLRQSMVGAD
VVGVIPLTGVWAGETIPVRTCFGPLIGQQSHSMEVAEWTDKAVNHVWKIYHSGVLEFCII
TTDENECNWMMFVRKARNREEQNLVAYPHDGKIYFCTSQDIPPENELLFYYSRDYAQQIG
VPEHPDVHLCNCGKECSSYTEFKAHLTSHIHDHLPSQGHNSSHGPSHSKERKWKCSMCPQ
AFISPSKLHVHFMGHMGMKPHKCDFCSKAFSDPSNLRTHLKIHTGQKNYRCTLCDKSFTQ
KAHLESHTVIHTGEKNLKCDYCDKLFMRRQDLKQHVLIHTQERQIKCPKCDKLFLRTNHL
KKHLNSHEGKRDYVCEKCTKAYLTKYHLTRHLKTCKGPTSSSSAQEEEEEEDSEEEDLAE
SVGTEDCRMGSALYSTEESLSTHK
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaaatgaacctcagccccgtgggcatggagcagctgacgtcatcctccgtgagc
aacgccttgccggtctcaggaagtcacctggggctggccgcctccccctctcacagtgcc
atccctgccccaggcctgccagtggcaattccaaacctgggtccctccctgagttctctg
ccttctgctttgtccctgatgctcccgatgggtattggggatcgaggggtgatgtgtgga
ttacctgagaggaactacaccctacctccgccgccgtacccccacctggagagcagctac
ttcaggacaattctacctggcattttgtcttacttagctgacaggccgcctcctcagtac
atccaccccaactccatcaatgtcgacggcaacacagcactgtcgattgccaataaccct
tcagcactagatccctatcagtccagtggcagcgtcgggttagagccgggcatcgtgtcc
atagactctcgctctgtgaacacacacggtgcccagagtcttcatcccagtgatggccac
gaggtggccctggacacaaccatcgccatggagaatgtttctcgggttaccagccccatc
tctacggaaggcatggcggaggagctggcgatggacggtgtggctggcgagcacccccag
atcccgagtggctccaggagtcacgagcctctgtccgtggattctgtgagcagcagcctt
gcagcggatgctgtaggacatggtgctgtgatgccgatgcacggcaacggcctggagctc
cctgtcgtcatggagacggaccatatttccagccgggtcagcggcctgtccgacagtgcc
ctcggtgactccatccacaccgtggccatgagcaccaactctgtaagcgtggcactctct
acctcacacaacctcgcctccctagaatccgtttccctccacgaagttggcctcagccta
gaacctgtggctgtttcctccatcacgcaggaggttgctatggggacaggccatgtagat
gtgtcttcagacagtctttcttttgtaccaccttcactgcaaatggaagactccaattca
aacaaggaaaacatggcaaccttgtttacaatttggtgtactctgtgtgaccgagcctac
ccctcggactgtcccgatcacggccccgtgacctttgttcctgacacgccgatagagagc
agggcaaggctgtccctgccaaagcagctggtcctgcgccagtcgatggtgggagcggac
gtagttggcgtgattccactgacaggggtgtgggctggagaaaccattcctgtgcgaacc
tgctttggacctctgattggccagcagagtcactccatggaagtggcagaatggacagac
aaggcagtgaaccacgtctggaagatctatcacagtggtgtcctggaattctgcatcatt
acaactgatgaaaatgaatgtaactggatgatgtttgtgcgtaaggccaggaaccgagaa
gagcagaatttggtggcgtatccccatgacggaaagatctatttctgcacctcccaggac
atccctcctgaaaatgaactgcttttctattatagtcgagattatgctcagcagattgga
gttcctgaacacccagatgtgcacctctgtaactgtggcaaggagtgcagttcttacaca
gaattcaaagctcatctgaccagccacatccatgaccatcttcctagccagggccacaac
agcagccacgggccaagccacagcaaagaaaggaagtggaagtgctctatgtgccctcaa
gcttttatctctccttccaaactccacgtccactttatgggtcacatgggaatgaagccc
cacaagtgtgatttctgtagcaaggcttttagtgaccccagcaacctgcggacccacctc
aagatacatacaggtcagaagaactacaggtgtaccctgtgtgacaagtctttcacccag
aaagctcacctggagtcccacacggtcatccacacgggcgagaagaatctcaagtgtgac
tactgcgacaagctgttcatgcggaggcaggacctcaagcagcacgtgctcatccacacc
caagaacgccagatcaagtgtcccaagtgtgataagctattcttgagaacaaatcactta
aagaagcatctcaattctcatgaaggaaaacgagattatgtgtgtgagaaatgtacgaag
gcttatctaaccaaataccatctcacccggcacttgaagacctgcaaaggacccacctcc
agttcctcagcccaagaggaggaagaagaggaggactcggaggaggaagaccttgccgag
tctgtggggacagaagactgtaggatgggcagtgctctgtattccacggaggagtctctg
tccacacacaaatag
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