Ochotona princeps (American pika): 101519402
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Entry
101519402 CDS
T07609
Name
(RefSeq) homeobox protein SIX5
KO
K19474
homeobox protein SIX5
Organism
opi
Ochotona princeps (American pika)
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
opi03000
]
101519402
Transcription factors [BR:
opi03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain SINE
101519402
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pkinase
SIX1_SD
PK_Tyr_Ser-Thr
DMPK_coil
Homeodomain
Homeobox_KN
Kinase-like
FTA2
ABC1
Kdo
ATG16
Pkinase_C
Haspin_kinase
CCDC138_cc
Motif
Other DBs
NCBI-GeneID:
101519402
NCBI-ProteinID:
XP_004598083
LinkDB
All DBs
Position
5:4349768..4363590
Genome browser
AA seq
1294 aa
AA seq
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MSAEVRLRRLQELVLDPGFLGLEPLLDLLLGVHQELGASDLAQDKYVADFLQWAEPIAAR
LKEVRLQREDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREER
DVLVNGDRRWITELHFAFQDENYLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIV
MAIDSVHQLGYVHRDIKPDNILLDRCGHIRLADFGSCLKLRADGTVRSLVAVGTPDYLSP
EILQAVGGGPGAGSYGPECDWWALGVFAYEMFYGQTPFYADSTAETYGKIVHYQEHLTLP
LADLGVPEEARDLIQRLLCPPETRLGRQGAADFQKHPFFLGLDWDGLRDSMPPFIPDFEG
ATDTCNFDVVEDGLTAMETLSDIQEVMPLGVHLPFVGFSYSCTALRDSEPPGPTPMELEA
EQLPEPQVQVPSPEQAGPLLEETAEVAVPVALPAAAVAEAEVTLGVLQEALEEEALTRQS
LSQELEAIRVANQNFASQLREAEALNRDLEARVRQLQERMQLLQAERAEAVTGVPSPRAT
DPPSHLDGPPAVALGQCPLVGPGPLHRRHLLLPARVPKPGLPEARPLRLLAAAALAPAPT
PGCAGLVARGRHRAAAWRPPGVLGSPPEATAEPPTGLRFSPEQVACVCEALLQAGHAGRL
SRFLGALPPAERLRGSDPVLRARALVAFQRGEYAELYRLLESRPFPAAHHAFLQDLYLRA
RYHEAERARGRALGAVDKYRLRKKFPLPKTIWDGEETVYCFKERSRAALKACYRGNRYPT
PDEKRRLATLTGLSLTQVSNWFKNRRQRDRTGSSSGAPCKSESDGNATTEDESSRSPEAQ
ERGVAPGPAEAPPAQGSIFLPGAAPPAPCATASSILVNGSLLAAAAGSSSAVLLNGSPVI
INSLALAEASSLGSLLLAGGSAAPPLPPPPPPVQPSPQGTSEAKAALILDPQTGEVRLEE
AQPEAPETKGAQVAGSGPAGEDMAGPLPQVVPGPPPAAAFPLPPGPVPAVAAPQVVPLSP
PPGYPTSPLLNLPQVVPSPQAVGSLQLLAAGPSSPVKVAAATGPTNVHLLNSGVGMTALQ
LPSATAPGNLLLANPVSGSPIVTGVAVQQGKIILTATFPTSMLVSQVLPPGPGLALPLKP
EAAISVPEGALPVAPSPALPEAHTLSISSAQQPVPPAAAAAAASATGLPFSPGPSSLVPG
FPAAPAEGLMLSPAAVPVWPAGLELNSGADGLLDGEKGLGSQAPHAVLRLPDPDSEGLLL
GATAEGEVDEGLEAAEAKVLTQLQSVPVEEPLEL
NT seq
3885 nt
NT seq
+upstream
nt +downstream
nt
atgtcagccgaggtgcggctgcggcggctccaggagctggtgctggaccccggcttcctg
ggcctagagcccttgctcgaccttctcctgggcgtccaccaggaactgggcgcctccgac
ttggcccaggacaagtacgtggccgacttcttgcagtgggcggagcccattgcggcaagg
cttaaggaggtccggctacagagggaggacttcgagattctgaaggtgatcggacgcggg
gcgttcagcgaggtagcggtggtgaagatgaagcagacgggccaggtgtatgccatgaag
atcatgaataagtgggacatgctgaagaggggcgaggtgtcgtgtttcagggaagagagg
gatgtgttggtgaacggggatcggcgctggatcacagagctgcactttgccttccaggac
gagaactacctgtacctggtcatggagtactacgtgggcggggacctgctaacgctgctg
agcaagtttggggaacggatcccagccgagatggcgcgcttctacctagccgagattgtc
atggccatagactcggtgcaccagctgggctatgtgcacagagacatcaaaccagacaac
atcttgctggaccgctgcggccacattcgcctggccgacttcggctcctgcctcaagctg
cgggcagatgggacggtgcggtcactggtggctgtgggcacgccggactacttgtcccct
gagatcctgcaggccgtgggcggtgggcctggagcaggcagctacgggcccgagtgtgac
tggtgggcgctgggcgtgttcgcctacgagatgttctacggacagacgcccttctatgcc
gactccactgccgagacctacggcaagatcgtccactaccaggagcacctgactctgccc
ttggccgacctgggggtccctgaggaggcccgagacctcatccagaggctgctgtgtccc
ccagagacccgactgggccggcagggggcggccgacttccagaagcatcctttcttcttg
ggcctcgattgggatggcctgcgggacagcatgcccccctttataccggattttgagggt
gccactgacacgtgcaacttcgatgtggtggaggatgggctcactgccatggagacgctg
tctgacatacaggaggtcatgccgctgggcgtccacctgccttttgtgggattctcctac
tcctgcaccgcgctcagggacagtgagcccccaggccccacccccatggaactggaggcc
gagcaattgcctgagccacaggtgcaagtgcccagccctgagcaagcagggcctctcctg
gaggaaacagctgaagtggcggttccggtggccctcccggctgcagcagtggccgaggcc
gaggtgaccctgggtgtgctccaggaggccctggaggaagaggcgctcacccggcagagc
ctgagccaggagctggaggccatccgtgtggccaaccagaacttcgccagccagctccgt
gaggccgaggccctcaaccgcgacctggaggcccgcgtgcgccagctgcaggagcggatg
cagctgctgcaagctgagcgggctgaagctgtcacgggggtccccagtccccgggccacg
gatccaccttcccatctagatggccccccggccgtggctctgggccagtgcccgctggtg
gggccaggccccctgcaccgccgccacctgctgctccctgccagggtccctaagcctggc
cttccggaggcgcggcccctgcgcctgctcgccgccgctgctctggctcctgcccccacc
ccaggctgcgctgggctggtggcccgcggccgccatcgcgccgcggcctggcgccccccg
ggcgtcctcgggtcgcccccggaggccaccgccgagccgcccacgggcctccgcttctcg
cccgagcaggtggcgtgcgtgtgtgaagcactgcttcaggcgggccacgccggccgcttg
agccgcttcctgggcgcactgcccccagccgagcgcctacgtggcagcgacccggtgctg
cgcgcgcgggccctggtggccttccagcggggcgagtacgccgagctctaccgactgctc
gagagccgccccttcccggctgcccaccacgccttcctgcaggacctctacctgcgtgcg
cgctatcacgaggccgagagggcccgcggccgcgcactgggcgcggtggacaaataccgg
ctgcgcaagaagttcccgctgcccaagaccatctgggacggcgaggagactgtctactgc
ttcaaggagcgctcccgcgccgcgctcaaggcctgctaccgcggcaaccgctaccccacg
cccgacgagaaacgccgcctggccacgctcaccggcctctcactcacgcaggtcagcaac
tggttcaagaaccggcgacagcgtgaccgcactgggagcagcagcggtgcgccctgcaag
agcgagtcagatgggaacgccactactgaggacgagtccagccgcagtcccgaggcccag
gagagaggcgtggccccggggcccgcagaagcgccccctgcccagggctccatcttcctg
cctggggctgcacctcccgccccgtgcgccaccgcttcctccatcctggtgaacgggagc
ctactggccgccgctgctggcagctcctcggccgtcctccttaatggcagccctgtcatc
atcaacagcctggctctggccgaagcctccagcctgggctccctgctgctcgcagggggc
agcgccgcccctcctcttcctccaccgccacccccggtgcagcccagtccccagggaacc
agcgaagccaaggcagccctaatcctggaccctcagactggtgaggtgcggctggaagaa
gcccagcctgaggccccagagaccaaaggggcccaagtggctgggtctgggccagcagga
gaagacatggccggacccctgccccaagtggtgcccggacccccaccagctgctgccttc
cctctgcccccaggaccagtgcctgcggtggctgccccacaagtggtgcccctgtcccca
ccccctgggtaccccacttccccgctcttgaacctgccccaggtggtaccctcgccccag
gctgtggggtccctgcagctgttggcagcagggcccagcagccctgtgaaggtggcggct
gccacagggcccaccaatgtgcacctgctcaactctggggtaggcatgacggccctgcag
ctgccttcagccaccgccccagggaacttgctcctggccaaccccgtctccggcagcccc
atcgtgacaggggtggccgtacagcagggcaagatcatcctcaccgccaccttccccacc
agcatgctggtctcccaggtcctgccgcctggccctggcctggccctgccgctgaaacca
gaggcggccatctccgtgccagagggtgccctcccggtggcccccagccccgccctccct
gaggcacacaccctcagcatcagctctgcacagcagccagtgcccccagcagctgctgca
gccgctgcctcagccactggcctgcccttctccccggggccgtccagcctggtgcctggc
ttccctgcggccccggctgaggggctgatgctgtccccagcggccgtgcctgtgtggcca
gcggggctggaactgaactcgggagctgacgggctgctggatggggagaaggggctgggc
tcacaggccccccatgctgtgttgaggctgccggaccccgactccgagggcttactcctg
ggagccacggcagagggtgaggtggacgaggggctggaggctgccgaggccaaggttctg
acccagctgcagtctgtgccagtggaggagcccttggaactgtga
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