Ochotona princeps (American pika): 101519631
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Entry
101519631 CDS
T07609
Symbol
TNRC6C
Name
(RefSeq) trinucleotide repeat-containing gene 6C protein
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
opi
Ochotona princeps (American pika)
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
opi03019
]
101519631 (TNRC6C)
03036 Chromosome and associated proteins [BR:
opi03036
]
101519631 (TNRC6C)
Messenger RNA biogenesis [BR:
opi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101519631 (TNRC6C)
Chromosome and associated proteins [BR:
opi03036
]
Eukaryotic type
Gene silencing
piRNA pathway
101519631 (TNRC6C)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
Ago_hook
UBA_7
UBA
RRM_1
RRM_occluded
UBA_Ucp12
RRM_ACIN1
THOC7
UBA_NBR1_C
UBA_HERC2
UBA2_UBAP-1
Motif
Other DBs
NCBI-GeneID:
101519631
NCBI-ProteinID:
XP_012784605
LinkDB
All DBs
Position
19:complement(2357876..2406169)
Genome browser
AA seq
1620 aa
AA seq
DB search
MAAASAPGSFPAHSKKASSSTGTHGTAVQSPANPSALGTGGAGGSGGATRGWGIATGSGS
GLPHCSVAAGDGKMDNMIGDGRSQNCWSASSSTASISLNLNPNANPAAWPVLGHEGAVVT
GSPASVCSPVSAIGQNMGNPNGHPPGTSGAWGSVLPQESTQPQPSTSHNVSLSTQPQNLH
TDGPNNTNPTNSSPNTGNAVQTNGLPNWGMAVGMGAIIPPHLQGLPGANGSSLSQVSGGE
GMNSSVWGLSPGNPATGSSNSGFGQGNGDTVNSALSAKQNGSSSAMHKEAGGGSAWGSGP
PAGPGVLAWGRGNGNMHAGAWGHPSRNTSNGAGGEWGKTPNQHSSSDINGKGPTGWESPG
VASQTPAMQPGSEHVTSWAKAAPSGTTASEGSSDGSSSHNEGGAGREGAESRRRDKGLLD
QGHIPLPRSDLDPRVLCNTGWGQTPVRQNTAWDLEESPRAERKRDDGTEAWGCAAAPPSN
SGGRSDGSSVKSTNTSTVSGWVSSPPAAVPANAGWGDNHGKAARGPGAWGDTASSAAATK
SGHTWSGAAGQEDRSPTWGEPAKPRSQNWGDGQRANPSWSAGAGDWADSASVLGHLAEGK
KNAPGWDAESSRAGPGWGDSSRSGAGGWGTNAKVNPGTNWGESLKPAPQQNWATKPQDNS
LSSWGGAASVKQTGAGWLGGPVPVKQKDSGEATGWEEPSPPSIRRKMEIDDGTSAWGDPS
SYNNKAVNMWDRNNPVTQSSATATTHRGGTPPPHQASSQLNRSPLLGPASKSMQEGWGSG
GDDVQLGGGQWEDEEGDLWDTAASQESAASNSSWGGTSKKGLKGLKTSAKQDEAWIMSRL
IKQLTDMGFPREPAEEALKSNNMNLDQAMSALLEKKVDVDKRGLGVTDYNGVVPKALGCR
PPISKESSMDRPTFLDKEGGLVEEPTTSPFLPSPSLKLPLANSALPGQALGGVASGLGMQ
NLNSSRQIPSGSLGVFGNSGAAQARTMPQPPVPPLNSSQPNLRAQVPQFLSPQVQAQLLQ
FAAKNIGLNPALLTSPVNPQHMTMLNQLYQLQLAYQRLQIQQQMLQAQRNVSGPMRQQEQ
QVARTISNLQQQIQQHQRQLAQALLVKPPPAPPPPLSLHPSAGKPATDNFPPHPQAPGLP
DLQTKEQQSSPNTFAPYPLAGLNPNMNASSMDMASGLSVKDPAQSQSRLPQWTHPSSMDN
LTSAASLDQSPSKHGAIPGGLSIGPPGKSSMDDSYSRYDLLPDSESPASPPVAVPHSWSR
AKPDSEKISNGSNISWPPEFHPGVPWKGLQNIDPENDPDVTPGSVPSGPTINTTIQDVNR
YLLKSGGPSPPSSQNATLPSSSAWPLSASGYSSSLSSLASAPSAPGKLSDMKSTWSSSPA
SHTQASLSHELWKVPRNPAAPTRPPPGLANPKPSSTWGASPLGWTSSYSSGSAWSTDSSG
RTSSWLVLRNLTPQIDGSTLRTLCLQHGPLATFHLNLTQGNAVVRYSSKEEAAKAQKSLH
MCVLGNTTILAEFAGEEEVNRFLAQGQALPPTSSWQPSGGAGQPRLGTSGSSHGLARSDA
AHWSAPCIGSKGSSELLWGGAPQYSSSLWGPPSTDDSRVVGSPTPLSTLLPGDLLSGESM
NT seq
4863 nt
NT seq
+upstream
nt +downstream
nt
atggctgcagccagcgctccgggcagcttccctgcacacagcaagaaggccagcagcagc
actggcacccatggcacggccgtccaaagccctgccaacccaagtgccctcggcacaggg
ggcgccggtggcagtggcggcgcgaccagaggatggggcatagccacaggctctggctct
ggcctccctcactgctctgtcgctgctggggatgggaagatggacaacatgattggagat
gggagaagtcagaattgctggagtgcttccagctccactgctagcatcagtctcaacctt
aaccctaatgccaaccccgctgcctggcctgtgctcggacatgagggagctgtggtgaca
ggtagccccgccagtgtttgcagtccagtcagtgccataggtcagaacatgggcaacccg
aacgggcacccaccgggcacctcaggtgcttggggcagcgtgctgccgcaggagagcaca
caaccacagccgtccacatcccacaacgtgtccttgagcacacaacctcagaaccttcac
actgacggaccaaacaacactaaccccacgaactcctcaccaaacactggcaatgcagtg
cagaccaacggactgcccaactggggcatggctgtgggcatgggggccatcatcccgccc
cacctgcaaggcctgcctggtgctaacggatcatcactttctcaagtcagtggaggtgaa
ggaatgaacagttctgtatggggattgtccccaggaaaccccgccacaggaagtagcaat
tccgggttcggtcaggggaatggagacactgtgaactcagcactcagtgctaagcagaac
ggatccagcagtgctatgcacaaggaagcaggtggggggagtgcctggggctcaggccct
cccgctggtcctggagtactggcctggggaaggggcaatggcaacatgcatgcaggggct
tggggccaccccagtcggaacacctctaacggtgcaggtggggaatggggaaagacccca
aaccagcattccagcagtgacatcaatgggaaaggacccacagggtgggagagtcctggt
gtggccagccagactcctgccatgcagcctggcagtgaacacgtgacctcttgggccaaa
gctgcaccttctggaaccacagcaagtgaaggcagtagtgacggttccagcagtcacaat
gaaggaggcgccgggagggaaggagcagaaagccggaggcgagacaaagggctcctggac
caggggcacatcccgctgccaaggagcgacctggaccccagagtgctgtgcaacactggc
tggggccagactcctgtcaggcagaacaccgcctgggacttggaagagtccccgagggcc
gaaaggaaaagggacgatgggacggaggcctggggctgcgcagccgctccaccctccaac
tcagggggcaggagcgatgggtccagcgtgaaaagtacaaatacctctacagtatcgggg
tgggtcagctcaccccctgctgctgtgccagcaaatgcaggctggggcgacaaccatggc
aaagcggcccgtggcccaggcgcctggggggacactgcgagctctgctgctgccaccaag
agtggccacacttggagtggggccgctggtcaggaggacagatcccccacctggggggaa
cctgcaaaacccagatcccagaactggggagacggacaaagagcgaaccccagctggagc
gcaggggcaggagactgggccgactcggcgtctgtgctgggccacctggcggaagggaag
aagaacgcgcctggatgggatgctgagagcagcagggcagggcctgggtggggtgatagc
tcaaggtctggagccggtggctggggcacaaatgcaaaggtgaatccaggtacaaactgg
ggggaatctctcaaacctgccccccaacagaactgggctaccaagccacaggacaacagc
ctgagcagctgggggggagctgcttctgtgaagcagacaggggcagggtggcttgggggg
cccgtgccagtgaagcagaaggacagtggggaggccaccggctgggaggagccctcgcct
ccatccatccgacgcaaaatggaaattgatgacggtacctcagcttggggggacccaagc
agctacaacaacaaagctgtcaacatgtgggacaggaacaacccggtgacccagagcagc
gccactgccaccacccacaggggcgggacgccaccaccgcaccaggccagctcgcagctg
aaccgatcgccattgcttgggccagcttccaaatctatgcaagaaggctggggcagcggt
ggggacgacgtccagctcggcggcggccagtgggaggacgaagagggggacctgtgggac
accgctgcctcccaggagagcgccgcctccaacagctcctggggcggcacctccaagaaa
ggactaaagggcctgaagacatctgctaaacaggacgaggcctggatcatgagccggctg
attaaacaactcaccgacatgggcttcccgagagagccagccgaggaggccttgaagagt
aacaatatgaatcttgaccaggccatgagcgctctcctggaaaagaaggtggatgtggac
aagcgtggcctgggagtgaccgactacaatggcgtggtccccaaagcccttggctgccgc
ccacccatctccaaagagtcttccatggaccgccccacctttctggacaaggaaggcggc
ctcgtggaagagcccacgacctcaccgtttttgccttcccccagcctgaagctccccctg
gcaaacagtgcactccccggtcaggccctgggtggggtcgcctcagggctgggcatgcaa
aacttgaattcttctagacagattccaagtggcagtctgggtgtgtttggcaacagcgga
gcagcacaagccaggaccatgccgcagccgccggtgccacctctgaattcctcccagccc
aatctccgtgctcaagtgcctcagtttctatcccctcaggttcaagcacagcttttacag
tttgcagcaaaaaacattggtctcaaccctgcactactgacctcgccagttaaccctcag
catatgacgatgttgaaccagctctatcagctgcagctggcataccaacgtttacaaatc
cagcagcagatgctacaagcccagcgtaacgtttccggacccatgagacaacaggagcag
caagtcgcacgcacaatcagtaacctgcagcagcagatccagcagcaccagcgccagctg
gcccaggccctgctcgtgaagccaccgcctgcgccaccgccgcccctgtctctgcacccc
tctgcaggcaagccggccacggacaacttcccccctcacccccaggctcctggcctcccc
gacctgcagaccaaagagcagcagtcttcacccaacacctttgctccttacccgctcgct
ggactgaatccaaacatgaatgccagcagcatggacatggccagcggcttgtcggtgaag
gacccggctcagtcccagtcacgcctcccccagtggacacaccccagctcgatggataac
ttgaccagtgctgcctctctggatcagagccctagcaaacatggtgctatccctgggggt
ctcagcattggccctccaggcaagtcctccatggatgactcttacagccggtacgatctc
ctccccgacagcgagtccccagccagtccccccgtagctgtgccccatagctggtcacgt
gccaaacctgacagcgagaagatctccaatggctccaacatcagctggcccccagaattc
caccccggggtcccgtggaaaggacttcagaacatcgaccccgaaaacgaccctgacgtc
acacccggcagcgtccccagtgggccgactatcaacaccaccatccaggacgtcaaccgc
tacctccttaagagcggagggccctccccaccgtcctcccagaatgccacgctgccttcc
tcgagtgcctggccactcagtgcctccggctacagcagctccttgagcagccttgcgtcg
gcacctagtgccccaggtaagctgtcggacatgaaatcaacgtggtcctccagcccggcc
tcccacacacaagcctccctgtctcacgagctgtggaaggtgcctaggaaccctgcggca
cccacgaggccaccgcccggcttagccaaccccaagccttcctccacgtggggtgccagc
cccctgggctggaccagctcctactcctcgggttctgcttggagcactgactcctcagga
agaacaagcagctggctcgtcctccgaaacctcacaccccagatcgatggttctactctg
cggacactgtgtctgcagcacgggcctctcgccaccttccacctgaacctgacccagggc
aacgccgtggtccgttacagctccaaggaggaagccgccaaggcccagaagtccttgcac
atgtgtgtcctaggaaacactaccatcttggcagagtttgccggcgaagaagaagtgaac
cgcttcctagcccaaggccaagcactgccacccacctccagctggcagccgagcggcggg
gcgggccagccgcggctgggcacctccggcagctcccacggcctggcgcgcagtgacgcc
gcccactggagcgctccttgcataggcagcaagggcagcagtgagctgctgtggggaggg
gcaccccagtactccagcagcctctgggggccccccagcaccgatgacagcagggtggtt
ggcagccccaccccgctgagcaccctgctgcccggggacctgctcagcggggagtccatg
tga
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