Ochotona princeps (American pika): 101520199
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Entry
101520199 CDS
T07609
Name
(RefSeq) ATP-binding cassette sub-family A member 6
KO
K05649
ATP-binding cassette, subfamily A (ABC1), member 6
Organism
opi
Ochotona princeps (American pika)
Pathway
opi02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
101520199
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
opi02000
]
101520199
Transporters [BR:
opi02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA5, 6, 8, 9, 10 subgroups
101520199
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
AAA_21
R1_ABCA1
RsgA_GTPase
AAA_15
SMC_N
AAA_29
nSTAND1
AAA_16
AAA_22
Dynamin_N
Motif
Other DBs
NCBI-GeneID:
101520199
NCBI-ProteinID:
XP_004593010
LinkDB
All DBs
Position
19:complement(39055449..39105312)
Genome browser
AA seq
1626 aa
AA seq
DB search
MTPKQRSVYHQTRALLQKIVLNKWRVRRESLLELGVAILIGLYMGVFSYFKENNRVPEIP
PQNLGRVDKFNSSSLKIFYTPVSNMTQQIINQTEFSPYLKGVSVAEALNEKHMDTLLQEN
IPNAVGIVFNDTFSYKLKFFNGYHVPFVKEEDFSGHCWNGYSETSCSLITYWTRGFVTLQ
TVLNAAIIEITTDHPVVDELMSVTAINMKTLPFISKDVFQNELFIFFSLLYFSPFIYFLT
INVTRERKKYKGLMKMMGLQDSAFWLSWGLVYAGFIFLGSIFIAIIITSTQIIVMTGFVV
IFTLFFLYGLSLVALTFLMSVLLKKAALTNLVEFLLTFFWGCVGFTVYYKQLPSSVEWIL
SICSPFAFTAGMSQVVQLEFNMNGVIFPDPSGDSYKMIATFFLLAFDGLIYSILALYLDK
ILPYGNDQHCSPLFCLKSSSHFQHRRIDNKVTEKVSDPEHPSDDCFEPVTAEFQGREAIR
LRNVQKEYNGKSGKVEALKGLFFDIYEGQITAVLGHSGSGKSSLLNILNGLSVPTRGSVT
IYNKNLSEKQDLEEVRKKTGICPQFNVHFDMLTVKENLSLFAHIKGIHPQEVEREVRQIL
LELDMQDVQDNLAKHLSEGQKRSLTLGIAILGDPQVLLLDEPTAGLDPFSRHRVWSLLRE
RRADRVILFSTHLMEEADLLADRKMIMSNGELKCSGSSVFLKRKWGLGYHLSLQKNEICD
PEQIILLINHHIPDAKLKTENKEKLVYTLPLEKTNKLPDLFGDLEKCLGKGVAGYDISMP
SLSEVFMKLEGRTTVRQDFEQPQKIKDSESLNDMGAASSCFPEMQKTVSGMGLWRMQICA
IAWLHFLKFKRGRKLFLTLLLILGIAVFPLIVEMIVLAITNTKTDWELKTDLYFLSPGQL
PQDPRTSLLIINNTESNIEDFIQSLKHQNILLEVDDFENRNGTSELSYNGAIIVSGKQKD
YRFSVVCNTKRVHCFPILMNIISNGLLRMFNHTQSIRIERGLYPHSYLMFWTGLPEGSTF
LLFLACSISPYIAMSSVSDYKRKAKSQLWVSGLHPSAYWCGQALLDINLLTFIILSTFLI
FYIVNMDHVYISSRIVFAVVVFSFGYGASLVFLTYVISFIFRKKKKHSGFWSFCFYIVFN
ITLSISVFCHLDLTVIIINMILVPSSTMGGFLLFLNDRAYEYHRKFNDPNFDLTAVDLLI
CLIPYFQALILIFVLRCLEMKCGNKIMQKDPVFRMSPQNRGIRPNPEEPIDEDEDVQAER
IRTATTSTTSRLDEKPVILARCLHKEYAGLKKNCCSKRKMKTAVKNVSFCIKKGETLGLL
GPNGAGKSSSMRMMCGITKPTSGEVELKGYTSVDSHQEEGVVKFLGYCPQENVLWPMLTV
KEHLELYAAVKGLRKADAARAISRLVDALNLREQLHVTVQKLTTGSTRQLCFVLSILGDP
PVLLLDEPSTGMDPTGQQQMWQAIRAAVRTSERAVLLTTHSLVEAEALCDRLAVMVSGRL
RCIGSIEHLKRKFGKGYILELKVKEPSQVTLLHMEILKLFPQAVQQTRYYPLLTYKLPLA
DVCPLSQAFHKLETVKHNFNLEDYSLSQCTLEKVLLELSKEQEVGGAEEEVDTTMRWRLL
PHSDEP
NT seq
4881 nt
NT seq
+upstream
nt +downstream
nt
atgacaccgaaacagagaagtgtttatcatcaaacacgagcacttctacaaaaaattgtt
ttaaacaaatggagagtaagaagagaaagtttactggaattgggtgttgcaatactgatt
ggactgtatatgggtgtattttcatatttcaaagaaaataatcgggttcctgaaatacct
cctcagaatcttggaagggtcgataaatttaatagctcttctctaaagattttttatact
ccagtctctaatatgacacagcagatcataaatcaaacggagttttctccctatttgaaa
ggagtaagcgtcgctgaggcactaaatgaaaaacatatggatactttgcttcaagaaaac
atcccaaatgctgtgggaattgtctttaatgacaccttctcttacaagttaaaatttttt
aatggatatcatgttccatttgtgaaagaagaagatttttcaggtcattgctggaatggg
tattcagagacttcatgctccttgatcacttattggactagaggatttgtgactttgcaa
actgtcttgaatgctgctattatagaaatcacaacggatcaccctgtggtagatgagttg
atgtcagttactgccataaatatgaagacattacctttcatttctaaagatgtttttcaa
aatgagttgtttattttcttcagcttgctgtatttttccccatttatatattttctaaca
atcaacgttacaagagagagaaaaaagtacaaaggtttgatgaaaatgatgggtcttcaa
gattcagccttctggctctcctggggtttggtttatgctggcttcatctttcttggttcc
attttcattgcaattattataacatccacccaaataatagtcatgactggctttgtagtc
atattcacactcttcttcttatacggcttatctttggtggcattaacattcctgatgagt
gtattgttgaagaaagctgccctcaccaatttagtggagttcctccttaccttcttttgg
ggctgtgtgggattcactgtgtattataaacagcttccatcatctgtggagtggattttg
agtatttgtagcccctttgccttcactgctggaatgagtcaggttgtccaactagaattt
aacatgaatggtgtaatttttcctgatccttcaggagattcatataaaatgatagcaact
tttttcctattggcttttgatggtcttatctactcgatattggcattatacttggacaaa
atcttaccctatggaaatgaccaacattgttctccattattttgcctgaagtcgtcatct
catttccaacaccgaaggattgataacaaggtcactgagaaagtatcagatcctgagcat
ccgtctgatgattgttttgagcccgtaactgctgagttccaaggcagagaagccatcaga
ctcagaaatgttcaaaaggaatataatggaaaatctggaaaagtggaagcattaaaaggc
ttgttctttgacatatacgagggtcaaataactgcagttctgggtcacagtggatctggc
aaatcgtcattgctgaacatccttaatgggttatctgttccgacacgaggatcagttacc
atatataataaaaatctctctgaaaagcaagacctggaggaagtaaggaagaaaactggt
atttgccctcaattcaatgttcactttgacatgctcacggtgaaggaaaacctcagcctg
tttgctcacataaaagggattcacccacaggaggtggaacgagaggtgcgacaaatttta
ttggaactggacatgcaagacgttcaagataaccttgctaaacatttgagtgaaggacag
aaaagaagcctgactcttggcattgccattttaggagatcctcaagtgttgctcttagat
gagccaactgctggactggatcctttctcaagacatcgagtgtggagcctcctgagggag
cgcagagcagaccgtgtgatcctcttcagtacccacctcatggaagaggctgacctcctg
gctgatagaaaaatgatcatgtcaaacggggaattaaagtgttcaggttcttctgtgttt
ttgaagagaaaatggggtcttggatatcacttaagtttgcaaaaaaatgaaatatgtgat
cctgaacaaataatattgctcattaatcatcacattcctgatgcaaaattgaaaaccgaa
aacaaagaaaagctggtatatactttgcccttggaaaagacaaataaacttccagatctg
tttggtgatctggaaaagtgcttaggcaaaggtgtagcaggttatgatatttccatgcca
agtctgagcgaagtcttcatgaaactggaaggaagaaccactgttagacaagattttgaa
caaccgcagaaaataaaagactcagaaagcctgaatgacatgggagcagcttcctcttgt
tttcctgaaatgcagaagaccgtgagtggcatgggcctctggaggatgcagatctgtgca
attgcatggctccatttcttaaagttcaaacgtggaaggaaactgtttttgaccctactt
ttgatattgggaattgcagtgttccccttgattgtggaaatgatcgttttagctataaca
aacaccaagaccgattgggaacttaaaactgacttgtatttcctctcgcccggccaactt
ccccaagaccctcgtaccagcttgttgatcatcaataacacagaatcaaatattgaagat
tttatacagtcactcaagcatcaaaacatacttttagaagtagatgattttgaaaacaga
aatggcacttctgaactctcatacaatggagctatcatagtttctggtaaacaaaaggat
tatagattttcagttgtgtgcaataccaagagagtgcactgttttccaatccttatgaat
attatcagcaacgggctacttcggatgtttaatcacacacaatctattcgaattgagaga
ggtctataccctcatagctatttaatgttttggactgggctgccagaaggctccacattc
ttacttttcttggcatgcagcatttctccttacattgccatgagcagtgtcagcgattat
aaaaggaaagctaagtcccagctctgggtctctggtctccacccttctgcttactggtgt
ggtcaggctctgctggacattaatctcctcactttcattatactttcaacgtttctaatt
ttctacattgtaaacatggatcacgtttatatttcaagtcggattgtgtttgctgtggtt
gtgttttcatttggttatggagcctctcttgtcttcttaacatacgtgatatcatttatt
tttcgcaagaagaaaaaacacagtggcttttggtcattttgcttttacattgtctttaac
attacactcagcatcagtgtgttttgtcacttggacctaaccgtcattattatcaacatg
atactggttccttcatctacaatgggtggatttttattgtttttgaatgatagagcttat
gagtaccacaggaaatttaatgaccccaattttgacctgactgcagtggaccttctaata
tgcctaataccctactttcaggctttgatactcatttttgttctaagatgcctggagatg
aaatgtggaaataaaattatgcaaaaggatcctgttttcagaatgtccccccaaaataga
ggtattcggccaaatccagaagaacccatagatgaagatgaagatgttcaagcagaaaga
ataagaacagcaactacctcaaccacttcaagattagacgagaaaccagtcatccttgcc
aggtgtctacacaaagaatatgcaggactgaagaaaaactgctgttcaaaaaggaagatg
aaaacagcagtaaaaaatgtctctttctgcattaaaaaaggtgaaactttgggattacta
ggacccaatggcgctggtaaaagttcatctatgagaatgatgtgtgggatcacaaagcca
acatctggagaggtggaactgaaagggtacacttcagtcgacagtcaccaggaagaaggc
gtggtcaagttcttgggatactgtcctcaggagaatgtgctatggcccatgctgactgtg
aaagaacacctggagttgtatgccgctgtgaagggcctgaggaaggcggatgctgcccgg
gctatttctcggttagtagatgctttaaatctgcgtgagcagctacatgttacagtacag
aagttaacgacaggaagcacaagacagctatgctttgtgcttagcatcctgggagatcca
cctgttcttcttctggatgaaccatccacaggcatggacccaacagggcagcaacaaatg
tggcaagccatccgggcagctgtaagaaccagcgaaagggctgtcctgctgaccacgcac
tccctggtggaggctgaggccctgtgtgaccgcctggcagtcatggtgtcgggaagactg
agatgcattggctccatcgaacacctgaagagaaaatttggcaagggctacattctagaa
ttgaaagtgaaggaaccctctcaagtgactttgctccacatggagattttgaagcttttc
ccacaggctgtacaacaaacaaggtattaccccttgttgacctataagcttccccttgcc
gatgtttgccctctgtctcaggcatttcacaaattagagacagtgaaacataactttaac
ttggaagactacagcctttctcagtgcacattggaaaaggtgctcctagagctttctaag
gagcaagaggtgggaggtgctgaggaagaagttgatacaaccatgagatggagactcctc
cctcattcagatgaaccttaa
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