Ochotona princeps (American pika): 101521268
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Entry
101521268 CDS
T07609
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
opi
Ochotona princeps (American pika)
Pathway
opi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101521268 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
opi03019
]
101521268 (XAB2)
03041 Spliceosome [BR:
opi03041
]
101521268 (XAB2)
Messenger RNA biogenesis [BR:
opi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
101521268 (XAB2)
Spliceosome [BR:
opi03041
]
Complex B
Other components
Prp19-related factors
101521268 (XAB2)
Complex C
101521268 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
TPR_14
HAT_PRP39_N
TPR_12
TPR_2
TPR_8
TPR_19
Suf
TPR_15
ARM_TT21_C
ARM_TT21
TPR_1
TPR_7
TPR_NPHP3
TPR_21
DUF5575_C
DHR-2_Lobe_A
Motif
Other DBs
NCBI-GeneID:
101521268
NCBI-ProteinID:
XP_004596072
LinkDB
All DBs
Position
Unknown
AA seq
757 aa
AA seq
DB search
MLVMARNSRPERPDLVFDEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRMTGERLPG
SGPLAEMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLP
ETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLATVVNDEQFVSKAGKSNYQLWH
ELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEA
IRTVMTVRDFTQVFDSYAQFEESMIAAKMETTSELGREEEDDVDLELRLARFEQLISRRP
LLLNSVLLRQNPHHVHEWHKRVALHEGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFA
KFYEDNGQLDDARVILEKATKVNFKQVDDLASVWCQCGELELRHENYDEALRLLRKATAL
PARRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVI
NYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQ
ALDGCPPKHAKTLYLLYAQLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEI
YGVTHTRSIYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTSA
FWQTWKEFEVRHGNEDTIREMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPG
QSGMDDMKLLEQRAEQLAAEAERDQPPRAQSKILFVR
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atgttggtgatggcgcgcaactcgcggcccgagcggccggaccttgtctttgacgaagag
gatctcccctatgaagaggaaatcatgcggaaccagttctctgtgaaatgctggctccgc
tacatcgaattcaaacagggggccccgaagcccaggatgactggtgaacgcttgcctggc
tcaggccccctggctgagatgccccggctgtggctggattattgccagttcctcatggac
cagggccgtgtcacacacacccgccgtaccttcgaccgcgccctgcgggccctgcccatc
acccagcactcccgcatctggcccctgtacctgcgcttcctgcgctcacaccccctgcct
gagacggccgtgcgaggctaccggcgcttcctcaagctgagccctgagagtgccgaggaa
tacatcgaatatctgaagtcgagcgatcggctggacgaggctgcgcagcgcctggccacc
gtggtcaatgatgagcagttcgtgtccaaggctggcaaatccaactaccagctgtggcac
gaactttgcgacctcatctctcaaaacccagacaaggtacagtccctcaacgtggacgcc
atcatccgcgggggcctcacccgcttcaccgatcagctgggcaagctctggtgctcgctg
gccgactactacatccgcagcggccactttgagaaggctcgggacgtgtacgaggaggcc
atccggacggtgatgaccgtgcgtgacttcacgcaggtgtttgacagttacgcccagttc
gaggagagcatgatcgccgccaagatggagacgacctcggagctggggcgcgaggaggaa
gacgatgtggacctggagctgcgcctggcccgctttgaacagctcatcagccggcggccc
ctgctactcaacagcgtcctgctgcggcaaaacccgcaccacgtacacgagtggcataag
cgtgtggccctgcacgagggccggccccgagagatcatcaacacatacacagaggccgtg
cagacggtggaccccttcaaggccacgggcaagccccacacgctgtgggttgcatttgcc
aagttttatgaggacaacgggcagctggacgatgcccgtgtcatcctggagaaggccacc
aaggtgaacttcaagcaggtggacgacctggcgagcgtgtggtgccagtgtggggagctg
gagctacggcacgaaaactacgatgaagcgctacggctgctgcggaaggcgacagcgctg
cccgcccgccgggccgagtacttcgacggctcggagcccgtgcagaaccgggtatacaag
tccctcaaggtgtggtcgatgctcgccgacctggaggagagccttggcactttccagtcc
accaaggccgtgtacgaccgcatcctggacctgcgcatcgccacgccccagattgtcatc
aactacgccatgttcctggaggaacacaagtacttcgaggagagtttcaaggcctacgag
cgtggcatctcgctcttcaagtggcccaacgtgtccgacatttggagcacttacctgacc
aagttcatcgcccgctacgggggccgcaagctggagcgggcccgggacctcttcgagcag
gcgctggacggctgcccacccaaacatgccaagaccctgtacctgctgtatgcgcagctg
gaggaggagtggggcctggcccggcacgccatggccgtgtacgagcgtgccacgcgcgcc
gtggagcccgcacagcagtacgacatgttcaatatctacatcaagcgggcggccgagatc
tatggggtcacgcacacacgcagcatctaccagaaagccatcgaggtgctgtcggacgag
cacgcccgagagatgtgcctgcggttcgcggacatggagtgcaagcttggggagattgac
cgagcccgcgccatctacagcttctgttcacagatctgcgacccacggaccaccagcgcc
ttctggcagacgtggaaggagttcgaggtgcgccatggcaacgaggacaccatccgtgag
atgctgcggatccgccgcagcgtacaggccacgtacaacacgcaggtcaacttcatggcc
tctcagatgctcaaggtgtcgggcagcgccacgggcaccgtgtccgacctggcccccggg
cagagcggcatggatgacatgaagttgctggaacagcgggccgagcagctggcagccgag
gccgagagggaccagcccccgcgagcccagagcaaaatcctgtttgtgaggtga
DBGET
integrated database retrieval system
