Ochotona princeps (American pika): 101521340
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Entry
101521340 CDS
T07609
Symbol
RC3H2
Name
(RefSeq) roquin-2 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
opi
Ochotona princeps (American pika)
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
opi03000
]
101521340 (RC3H2)
04121 Ubiquitin system [BR:
opi04121
]
101521340 (RC3H2)
Transcription factors [BR:
opi03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
101521340 (RC3H2)
Ubiquitin system [BR:
opi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
101521340 (RC3H2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-CCCH
zf-RING_UBOX
zf-RING_2
zf-CCCH_4
Prok-RING_4
zf-C3HC4
zf_CCCH_4
zf-CCCH_UNK
zf-C3HC4_4
Xin
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
101521340
NCBI-ProteinID:
XP_004593649
LinkDB
All DBs
Position
1A:7922153..7970092
Genome browser
AA seq
1187 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD
IDVLPVNFALLQLVGAQVPDHQSIKLSNLGENKHYEVAKKCVEDLALYLKPLSGGKGIAS
LNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELLANI
DPNPDAVSPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCRDLR
QQGGCPRGTNCTFAHSQEELEKYRLRNKKINATVRTFPLLNKVGVNNTVTTTAGNVISVI
GSTETTGKIVPSSNGISSAENSASQLIPRSTDNTLRTLETVKKVGKAGTNGQNAAGPAAE
SVTENKIGSPPKTPVSHVAATSAGPSNVGTELSSVPPKSSAFLTRVPVYPQHSENIQYFQ
DPRTQIPFEVPQYPQTGYYPPPPTVPAGVAPCVPRFVRSNNVPESSLPPASMPYADHYST
FSPRDRMNSSPYQPPPPQPYGPVPPVPSGMYAPVYDSRRIWRPPMYQRDDIIRSNSLPPM
DVMHSSVYQTSLRERYNSLDGYYSVACQPPSEPRTTVPLPREPCGHLKTSCEEQIRRKPD
QWAQYHTQKAPVSSTLPVATQSPTPPSPLFSVDFRTDFSESVSGTKFEDDHLSHYSPWSC
GTIGSCINAIDSEPKDVIANSNAVLMDLDSGDVKRRVHLFETQRRTKEEDPIIPFSDGPI
ISKWGAISRSSRTGYHTTDPVQATASQGSATKPISVSDYVPYVNAVDSRWSSCSSETTSS
AHYVERDRFIVADLSSHRKHSSTGDLLSLELQQAKSNSLLLQREANALAMQQKWNSLDEG
RHLTLNLLSKEIELRNGESDYTEDAADTKPDRDIELELSALDTDEPDGQSEQIEEILDMQ
LGISSQNDQLLNGTAVENGHPAQHQKESLKQKRQSLGEDPVILEEQKTILPVTSCFSQPL
PVSVSSAGCLPSTTSVSVGNLILKTHVMSEDTADFLKPVANGKMVNS
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgcaggcagctcaatggacagagtttctgtcctgtccaatctgctataatgaa
tttgatgagaatgtgcacaaacccatcagtttaggttgttcacacactgtttgcaagacc
tgcctgaataaacttcaccgaaaagcgtgtccgttcgaccagactgccattaacacagac
attgatgtgcttcctgtcaactttgcacttctccagttagttggagcccaggtaccagat
catcagtcaataaagttaagtaatttaggtgagaataaacactatgaggttgcaaagaaa
tgtgttgaggatttggcgctctacttaaaaccattaagtggagggaaaggtatagctagt
ttgaaccagagcgcactgagccgtccaatgcaaaggaaactggtgactcttgtaaactgt
cagctggtggaggaagaaggccgtgtcagagccatgcgagccgcccgttcacttggagaa
agaactgtaacagagctgatattacagcatcagaaccctcagcagctgtctgccaatctg
tgggctgctgtcagggctcgaggatgccagtttctagggccagctatgcaagaagaagcc
ttgaagctggtattattggcattagaagatggctctgctctctcaaggaaagttttggta
ctttttgttgtgcaaagactagagccaagatttcctcaggcatcaaaaacaagtattggt
catgttgtacaactactctatagagcttcttgttttaaggttaccaaaagggatgaagac
tcttccctgatgcagttaaaggaagaatttcgtagctatgaggcattacgcagagaacac
gatgcccagattgttcatattgccatggaagcaggacttcgaatttcacctgagcaatgg
tcctcacttttatacggtgacttggcccataagtcacatatgcagtctattattgataag
ctgcagtctccagagtcatttgcaaagagtgtccaagagttgacaattgttttgcaacga
acaggtgacccagctaacttaaatagactgagacctcatttagagcttcttgcaaacata
gaccccaatccagatgctgtttcaccaacttgggagcagctagaaaatgcaatggtagcc
gttaaaacagtggttcatggtcttgtggacttcatacagaattatagtagaaaaggccac
gagacgcctcagccacaaccaaacagcaaatacaagaccagtatgtgccgagatctgcgc
cagcaaggaggatgtcctcgaggaacaaactgtacatttgcccattctcaggaagaactt
gaaaagtatcgattaaggaataaaaagatcaatgcgactgtaagaacatttcctcttcta
aataaagttggtgtaaacaacacggttacaaccacagccggaaatgtcatttctgtcata
ggaagtactgaaacaacggggaaaattgttccaagttcaaatggaatttcaagtgcagaa
aacagtgcttctcagctgatcccacgcagtaccgacaatacgctaagaactctggaaact
gtgaagaaagtgggaaaggctggcaccaatggtcagaatgctgcggggcccgctgcggag
tctgtaactgaaaataaaattggttctccacccaagactcctgtaagtcatgtggctgct
acctcagctgggccctctaacgttggaacagagctgagttccgtgcctcccaaatccagt
gcatttctgactagagtaccagtgtatcctcagcattctgaaaacattcagtattttcaa
gatccaagaactcagattccctttgaagtcccacagtacccacagacaggatactaccca
ccacctccaacggtaccagctggtgtggctccctgtgttcctcgctttgtgaggtccaat
aatgttccagaatcctccctcccacctgcttccatgccatatgctgatcattacagtaca
ttttcccctcgagatcgaatgaattcttctccttaccaacctcctcctccgcagccgtat
ggaccagttcctccagtaccttctggaatgtatgctcctgtatatgacagcaggcgcatc
tggcgcccacctatgtaccaacgagatgacattatcagaagcaattctttacctccgatg
gatgtgatgcactcatctgtctatcagacatctttgcgagaaagatataactcattagat
ggctattactcagtggcttgtcagccaccaagtgagccgaggacaactgtgcctttacca
agggaaccttgtggtcatttgaagactagttgcgaagagcagatcagaagaaagccagat
cagtgggcacagtaccacactcagaaagctcctgtctcttcaactcttcctgtggcaaca
cagtctccaacaccaccttctcctctattcagtgtagactttcgcacggatttctctgag
agtgtgagtggtacaaaatttgaagacgatcatctttcccattattctccctggtcttgt
ggcaccataggctcctgtataaatgctattgattcagaacccaaagatgtcattgctaat
tcaaatgctgtgttaatggacctggacagtggggatgttaagaggagagtacatttattt
gaaactcagagaaggacaaaagaagaagacccaataattccttttagtgatggacccatt
atctcaaaatggggtgcaatttccagatcctcccgtacaggttaccataccacagatcct
gttcaggctactgcttcccaaggaagtgcaactaagcccatcagtgtatcagattatgtc
ccttacgtcaatgctgttgattcaaggtggagttcgtgcagcagtgagaccacgtcgtca
gcacactatgttgaacgggacaggttcattgttgctgatttatctagtcacagaaagcat
tccagcactggagacctcctgagcctggaacttcagcaggccaagagtaattcattactt
cttcagagggaggctaatgctctggccatgcaacagaagtggaactccctggatgaaggc
cgtcaccttacattaaatcttctaagcaaggaaattgaactgcgaaatggagagagtgat
tatacagaggacgcagcagatactaaacccgacagggatattgaactagagctttcagca
cttgatactgatgaaccagatggacaaagtgaacaaattgaagagatcttggacatgcaa
cttggtattagttctcagaatgatcagttgttgaatggaacagcagtggaaaatggacat
ccagcacaacaccagaaggagtccctgaagcagaagagacagagtttaggtgaagaccct
gtgattctggaggagcaaaagacgattctgccagtaacttcttgctttagccagccactg
ccagtgtccgtcagcagtgcaggctgcctgcccagcaccacgtccgtcagtgtgggtaat
ctcattctgaaaactcatgtgatgtctgaagatacagccgactttttaaaacctgttgca
aatgggaagatggttaacagctga
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