Ochotona princeps (American pika): 101521460
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Entry
101521460 CDS
T07609
Symbol
HFM1
Name
(RefSeq) LOW QUALITY PROTEIN: probable ATP-dependent DNA helicase HFM1
KO
K15271
ATP-dependent DNA helicase HFM1/MER3 [EC:
5.6.2.4
]
Organism
opi
Ochotona princeps (American pika)
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
opi03036
]
101521460 (HFM1)
Enzymes [BR:
opi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
101521460 (HFM1)
Chromosome and associated proteins [BR:
opi03036
]
Eukaryotic type
Meiosis-specific proteins
Others
101521460 (HFM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Sec63
SNRNP200_wHTH
Helicase_C
ResIII
AAA_22
DEXQc_Suv3
Hfq
Motif
Other DBs
NCBI-GeneID:
101521460
NCBI-ProteinID:
XP_012781440
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All DBs
Position
13:complement(80792318..80897561)
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AA seq
1382 aa
AA seq
DB search
MLKSNDLFPVDNLFFKKQDEVKKYSDNEKSLGWFLPPVPLLSEIPDTQVLEEEIESHNLI
GQGKRLKMLTSSSKIINEDIDYVSPTQKFQFAFPLKTYDQEQILGGTRNNDLSHSTSKLT
YSSQKYKNHISTAIATEENVPDDANLVKSVEEKGESTSAFRKRLFKISDNVHGSANYNDT
ANLNTDITSVKTIQADVNKGKSWNGSSNNKKPHYSANMLIANDGFSASEIGKGMFRESPF
SVXSQXHGIQRRTEGGLGCLKAVTEIPTKYRSIFKEFPYFNYIQSKAFDDLLYTDRNFVI
CAPTGSGKTVVFELAITRLLMEVPLPWSNIKIVYMAPIKALCSQRFNDWKEKFGPIGLSC
KELTGDTVMDDLFEIQHVHIIMTTPEKWDSMTRKWRDNCLVQLVRLVLIDEVHIIKDENR
GPTLEVVVSRMKTVRSLSQTSENRSTIIPMRFIAVSATIPNAEDIAEWLSDDERPAVCLK
MDESHRPVKLQKVVLGFPYNSNQTEFKFDLYLNYKIASVIQTYSDQKPSLVFCATRKGVQ
QAASVLVKDAKFVLTAEQKQRLQKYAYSVRDLKLKDMLMHGVAYHHAGMELSDRKVVEEV
FTTGDLPVLFTTSTLAMGVNLPAHLVVIKSTMHYAGGMFEEYSETDILQMIGRAGRPQFD
TTATAVIMTRLSTRDKYIEMLACSNTVESSLHRHLIEHLNAEIVLHTITDVNVALEWIRS
TLLYIRALKNPSHYGFAAGLNKEGIEEKLQELCLKNLNALSSLELIKMDEDVNFKPTEAG
RLMAWYYITFDTVKKFRKINGTETLSDLTIDCFFLTSLIQAQLGCIPIQDFALTQDTAKI
FRTGSRVTRWLSDFVAAQEQKFTTLLNSLILAKCFRCKLWENSLHVSKQLEKIGVTLSNA
MVNAGLTSFKRIEETDARELELVLSRHPPFGTQIKETVTHLPKYELEVKQIARYGDTMAE
ILVTITLRNFEQLQTKRTAPDSHCITLIIGDADNQVVFKHKIMDSVLLKSGNWTKKIDVK
RALRSGDLSINLISTDFVGLDIQQKFSVLYLKSKSFENQIIMERTSETDISYSKHSAKSI
AAGPNKGMTTCKKPGNRECNHPCKNKQMCGHDCCKTGVAQKSEIKESTISSYLSDLRNRT
SSLPPVKRLKMQMNNKSQSVDLTEFGFTPKPCLSSISRSEILNVPEFTKMEQWDQPKTCR
RIQQGPSEYQEKEVLNVNFELGNDAWDDFDDENLIEVTSFPADEEKTEVSGFGNTLSSST
GGYKLPLQDSKRKFQREASNSVVSSHEKADIYLSNSMSKFGASCLMQSPQKAGNGNMVHL
QEGKQQALSPEIKIINSHQKSISKNVEIFFRENEYKKGTDFSYSNDEADEMKCFLGIFDG
IF
NT seq
4149 nt
NT seq
+upstream
nt +downstream
nt
atgctgaaatcaaatgatttgtttcctgttgataatttgtttttcaaaaagcaagatgaa
gttaaaaaatattcagacaatgaaaaatctttgggttggtttctgcctcctgttccattg
ctttcagaaattccagatactcaagtattagaggaagaaatagaaagtcataatctaata
ggtcaagggaaaaggctaaaaatgttaacatcaagttcaaagattattaatgaagatata
gattatgtttccccaacacagaaattccagtttgctttcccccttaaaacatatgatcaa
gagcaaattttaggagggacaagaaataatgatttatcgcatagtactagcaagctgacc
tatagttcccagaaatataaaaatcacattagcactgcaatagcaactgaggaaaatgtt
cctgatgatgcaaacttggttaagtctgtggaagaaaaaggagagagcacatcagcattc
cggaaaagattatttaaaatatctgacaatgtacatgggagtgctaattataatgacact
gccaacttgaacactgatattacctcagtgaaaactatccaggcagatgtgaacaaaggg
aaatcatggaacggtagcagtaataataaaaaacctcactattctgcaaacatgcttatt
gcaaatgatggcttttcagcttctgaaattggaaaaggtatgttcagagaatcacctttt
tcagtttaatcccagnctcatggcattcagagaagaacagaaggtggtttaggttgcttg
aaggctgtcacagaaatcccgacaaaatatagaagcattttcaaagaatttccatatttc
aactatatacagtcaaaagcctttgatgatctcctttatacagataggaactttgtgatc
tgtgctccaactggttctgggaaaactgtagtatttgaacttgccatcacaagattgcta
atggaagtgccattgccctggtcaaatattaaaattgtttatatggcaccaataaaagct
ctgtgtagtcagcgttttaatgactggaaggaaaaatttggaccaataggattgagttgt
aaggaactcactggagatacagtaatggatgacttgtttgagattcagcatgttcatatt
attatgacaactccagaaaaatgggatagcatgactaggaaatggagagataactgtttg
gtccagttggttcgactagttctcattgatgaggtacatattataaaagatgaaaatcgt
ggtccaacccttgaagttgtagtcagcagaatgaaaactgtaaggtctttatctcagacg
tcagaaaacagaagcaccattattccaatgagattcatagctgtgtctgcaacaattcca
aatgctgaggatattgcagaatggctttcagatgatgaaagacctgctgtttgtctgaaa
atggatgagagccatagacctgtgaaacttcagaaagtggtccttggatttccttacaat
agtaaccaaactgaatttaagtttgacttatacctcaactacaaaattgccagtgtcata
caaacatattctgatcagaaaccctcacttgtgttttgtgcaacaaggaaaggtgtgcaa
caggctgcttctgttcttgtgaaagatgctaaatttgttttgactgcggaacagaaacag
aggttacagaagtatgcatattccgtaagagatttgaaactgaaagatatgttaatgcat
ggtgttgcttatcatcatgctggtatggagctgtcagatagaaaagtagttgaagaagtt
tttactactggagatctaccagttctttttactaccagtactttagctatgggagtaaat
ttgcctgctcacctagttgttataaaatcaacaatgcattatgctggaggaatgtttgag
gaatacagtgaaacagatattctgcagatgattggtagagctggtcgacctcaatttgat
actacagcaactgcagttattatgactcgattaagtacaagagacaagtatattgaaatg
ttagcttgtagtaacactgtagaaagcagtttgcacagacatcttattgaacatttaaat
gcagagatagtattacatactatcacagatgtgaatgttgctttggaatggatacgatca
accttgctttatatcagagccctgaaaaatccatctcattatggttttgcagctggatta
aataaagaaggaattgaagaaaaattacaagaattatgtctgaagaatctgaatgctttg
tcatctctggaattgataaagatggatgaagatgttaacttcaaaccaactgaggcagga
agattgatggcttggtattatataacatttgacacagtgaagaaatttcgcaaaatcaat
ggaacagaaactttatcagatctgacaattgactgttttttcttaaccagtcttattcag
gctcaactaggatgtattcccattcaagattttgctttgacacaagatacagcgaagatt
ttcagaactggctcacgagttacaagatggttgtcagattttgtcgctgctcaagaacag
aagtttaccaccttattgaatagtttaattttggctaaatgttttaggtgtaaactttgg
gagaactctctacatgtttccaaacagttggaaaaaattggtgtaacattgtcaaatgcc
atggtaaatgcaggtttgacctcgtttaaaagaatagaagaaacagatgcaagagaactt
gaactggttttaagtagacatcctccatttggaacccagataaaggaaactgtgacacat
ctaccaaagtatgaacttgaagtgaaacagattgcaagatatggtgatacaatggcggaa
atactagtgaccattacattaagaaattttgaacaactacagactaaaagaacagcacca
gattctcactgtattaccttaatcattggtgatgcagataatcaagtagtttttaagcac
aaaattatggattctgttttgctaaaatctggaaattggactaaaaagattgatgtgaag
agagctcttagatctggagatcttagcataaatttaattagtactgattttgttggactt
gatattcagcagaaattctcagtcctttacttaaaatccaagagctttgaaaatcaaata
attatggagagaacatcagaaacagatatttcctattctaaacattctgcgaaatctatt
gcagcaggacccaataaaggaatgactacttgcaaaaagcctgggaaccgagaatgcaat
catccctgcaaaaataaacaaatgtgtggacacgactgctgtaaaactggagttgcacag
aaatcagaaattaaagagtcaacaatttcttcatatttatctgatttaagaaacaggact
tcatctcttcctccagttaaacggctcaagatgcagatgaataataaatcacaaagtgtg
gaccttacagaatttggatttactccaaaaccttgtctatccagtatatcaagatcagaa
atattaaatgtacctgaattcactaaaatggaacaatgggatcagcctaagacttgcaga
agaattcaacaaggaccatcggagtatcaagaaaaagaagttttgaatgtgaactttgaa
ttgggaaatgatgcttgggatgattttgatgatgaaaacttaatagaagttactagcttt
ccagctgatgaagagaagactgaagtatcaggatttggaaacactctgagttcaagtact
gggggatataagctacctctccaagactcaaagagaaaattccaaagagaagcatcaaac
agtgttgtttcatcacacgagaaggcagatatttatttatcaaattctatgtccaagttt
ggtgcttcctgcttgatgcaatcacctcaaaaagctggaaatggaaacatggttcattta
caagaaggaaaacaacaagcactgtcaccagagatcaagatcattaactcccaccaaaaa
tcaatttctaagaatgtggaaattttctttagagaaaatgaatataaaaagggaactgat
ttcagttattccaatgatgaagctgacgaaatgaagtgtttcctgggaatatttgatggt
attttctag
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