Ochotona princeps (American pika): 101521545
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Entry
101521545 CDS
T07609
Symbol
CNOT2
Name
(RefSeq) CCR4-NOT transcription complex subunit 2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
opi
Ochotona princeps (American pika)
Pathway
opi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101521545 (CNOT2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
opi03019
]
101521545 (CNOT2)
Messenger RNA biogenesis [BR:
opi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101521545 (CNOT2)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
101521545 (CNOT2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
101521545
NCBI-ProteinID:
XP_004583080
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All DBs
Position
4:27896699..28004542
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AA seq
550 aa
AA seq
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MRTVRKGHDSMVRTDGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMF
PHRSEKDMLASPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHV
TPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSS
PSIICMPKQQPSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDF
PALADRNRREGSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKD
PTSSNDDSKSNLNASGKTSTSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPPGM
VTDQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRP
QDIDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWR
YHKEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPST
FNYNPAQQAF
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgcgtactgtgaggaaaggacacgactctatggtgaggactgatggacatacattatct
gaaaaaagaaactaccaggtgacaaacagcatgtttggtgcttcaagaaagaagtttgta
gagggggtcgacagtgactaccatgatgaaaatatgtactacagccagtcttctatgttt
ccacaccggtcagaaaaagatatgctggcatcaccatctacatcaggtcagctgtctcag
tttggggcaagcttatacgggcaacaaagtgcactaggccttccaatgagggggatgagc
aacaatacccctcagttaaatcgcagcttatcccaaggcactcagttaccgagccacgtc
acgccaacaacaggggtaccaacaatgtcacttcacacgcctccatctccaagcaggggt
attttgcctatgaatcctaggaatatgatgaaccactcccaggttggtcagggcattgga
attcctagcaggacaaatagcatgagcagttcagggttaggtagccccaacagaagctcg
ccaagcataatatgtatgccaaagcagcagccttctcgacagccttttactgtgaacagt
atgtctggatttggaatgaacaggaatcaggcatttggaatgaataactccttatcaagt
aacatttttaatggaacagacggaagtgaaaatgtgacaggattggacctttcagatttc
ccagcattagcagaccgaaacagaagggaaggaagtggtaacccaactccattaataaac
cccttggctggaagagctccctatgttggcatggtaacgaaaccagcaaatgaacaatcc
caagacttctcaatacacaatgaagattttccagcattacctggttccagctataaagat
ccaacgtcgagtaatgatgacagtaaatctaatttgaatgcgtctggcaagacaagtacg
agtacagatggacccaaattccctggagataaaagttccacaacacaaaataataatcag
cagaaaaaagggatccaggtgttacctgatggtcgggttactaacattcctccagggatg
gtgacggaccaatttggaatgattggcctgttaacattcatcagggcagcagagacagac
ccaggaatggtacaccttgcattaggaagtgatttaacaacattaggcctcaatctgaac
tctcctgaaaatctctaccccaaatttgcgtcaccctgggcatcttcaccttgtcgacct
caagacatagacttccatgttccatctgagtacttaacgaacattcacattagggataag
ctggcagcaataaaacttggccgttatggagaagaccttctcttctatctttattacatg
aatggaggggatgtattacaacttttagctgcagtggagcttttcaaccgtgattggaga
tatcacaaagaagagcgagtatggattaccagggcacccggcatggagccaacgatgaaa
accaatacatacgagaggggaacatattacttctttgactgtcttaactggaggaaagta
gctaaggagttccatctggaatatgacaaattagaagagcggcctcacctgccatccacc
ttcaactacaaccctgctcagcaagccttctaa
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