Ochotona princeps (American pika): 101521911
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Entry
101521911 CDS
T07609
Symbol
TRIP12
Name
(RefSeq) E3 ubiquitin-protein ligase TRIP12 isoform X6
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
opi
Ochotona princeps (American pika)
Pathway
opi04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
101521911 (TRIP12)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
opi04121
]
101521911 (TRIP12)
Enzymes [BR:
opi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
101521911 (TRIP12)
Ubiquitin system [BR:
opi04121
]
Ubiquitin ligases (E3)
HECT type E3
101521911 (TRIP12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WWE
HEAT_2
HEAT_Maestro
Motif
Other DBs
NCBI-GeneID:
101521911
NCBI-ProteinID:
XP_004576800
LinkDB
All DBs
Position
7:complement(110699532..110798461)
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AA seq
2040 aa
AA seq
DB search
MSNRPNNNPGGSLRRSQRNTAGAQPQDDTIGGRSHLGQAKHQGYSPPECRKSNSKAPKVQ
SNTTTELSRGHLSKRSCGSSSAVIVPQSEDPERASTSERQKTVQVPKKDNSRGVKRSASP
DYNRTNSPSSAKKPKALQHTEASSETKKPHSKSKKRPLDQEQQLKSAQSPSTSKAHTRKS
GAAGSSRSQKRKRTESSCVKSAAGSESTGAEERSAKPTKLASKSAASARAGCSTITDSSS
AASASSSSSAVASVSSTAPAGARVKQGKDQSKARRSRSASSPSPRRSSREKEQSKTGGSS
KFDWAARFSPKVSLPKTKLSLPGSSKSETSKPGPSGLQAKLASLRKSTKKRSESPPAELP
SLRRSTRQKTTGSCASTSRRGSGLGKRGAAEARRQEKMADPEGNPEAVHPSAARPEEAPQ
GAAASSSVAGAVGMATSGESESDDSEMGRLQALLEARGLPPHLFGPLGPRMSQLFHRTIG
SGASSKAQQLLQGLQASDESQQLQAVIEMCQLLVMGNEETLGGFPVKSVVPALITLLQME
HNFDIMNHACRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQCIDVAEQALTALEMLSRR
HSKAILQAGGLADCLLYLEFFSINAQRNALAIAANCCQSITPDEFHFVADSLPLLTQRLT
HQDKKSVESTCLCFARLVDNFQHEENLLQQVASKDLLTNVQQLLVVTPPILSSGMFIMVV
RMFSLMCSNCPTLAVQLMKQNIAETLHFLLCGASNGSCQEQIDLVPRSPQELYELTSLIC
ELMPCLPKEGIFAVDTMLKKGNAQNTDGAIWQWRDDRGLWHPYNRIDSRIIEQINEDTGT
ARAIQRKPNPLANTSTSGYSELKKDDARAQLMKEDPDLAKSFIKTLFGVLYEVYSSSAGP
AVRHKCLRAILRIIYFADAELLKDVLKNHAVSSHIASMLSSQDLKIVVGALQMAEILMHK
LSDIFSVYFRREGVMHQVKHLAESEALLTSPPKVCTNGSGSLGSTAPVTSAAATAATNAP
ADVGSPSLQHSRDDSLDLSPQGRLSDVLKRKRLPKRGPRRPKYSPPRDEDRVDNQAKSPT
TTQSPKSSFLASLNPKTWGRLSTQSNSNNIEPARTAGVSGLARAASKDTISNNREKIKGW
IKEQAHKFVERYFSSENMDGSNPALNVLQRLCAATELLNLQVDGGAECLVEIRSIVSESD
VSSFEIQHSGFVKQLLLYLTSKNEKDAVSREIRLKRFLHVFFSSPLPGEEPIGRVEPVGN
APLLALVHKMNNCLSQMEQFPVKVHDFPSGNGTGGSFSLNRGSQALKFFNTHQLKCQLQR
HPDCANVKQWKGGPVKIDPLALVQAIERYLVVRGYGRVREDDEDSDDEGSDEEIDESLAA
QFLNSGNVRHRLQFYIGEHLLPYNMTVYQAVRQFSIQTEDERESTDDESNPLGRAGIWTK
THTIWYKPVREDEESNKDCVGGKRGRAQTAPTKTSPRNAKKHDELWHDGVCPSVSNPLEI
YLIPTPPENITFEDPSLDVILLLRVLHAVSRYWYYLYDNAMCKEIIPTSEFINSKLTAKA
NRQLQDPLVIMTGNIPTWLTELGKTCPFFFPFDTRQMLFYVTAFDRDRAMQRLLDTNPEI
NQSDSQDSRVAPRLDRKKRTVNREELLKQAESVMQDLGSSRAMLEIQYENEVGTGLGPTL
EFYALVSQELQRADLGLWRGEEVTLSNPKGSQEGTKYIQNLQGLFALPFGRTAKPAHIAK
VKMKFRFLGKLMAKAIMDFRLVDLPLGLPFYKWMLRQETSLTSHDLFDIDPVVARSVYHL
EDIVRQKKRLEQDKSQTKESLQYALETLTMNGCSVEDLGLDFTLPGFPNIELKKGGKDIP
VTIHNLEEYLRLVIFWALNEGVSRQFDSFRDGFESVFPLSHLQYFYPEELDQLLCGSKAD
TWDAKTLMECCRPDHGYTHDSRAVKFLFEILSSFDNEQQRLFLQFVTGSPRLPVGGFRSL
NPPLTIVRKTFESTENPDDFLPSVMTCVNYLKLPDYSSIEIMRDKLLIAAREGQQSFHLS
NT seq
6123 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaccggcctaataacaatccaggggggtcactgcgacgttcacagaggaacact
gccggggcccaaccacaagacgacacgataggaggaaggtcacatttagggcaggcaaaa
catcagggatatagccctcctgagtgtagaaaatctaattctaaggcacccaaagtgcag
tctaatactactactgaactgtcaaggggacacctttctaaaagaagctgcggttcatca
tctgctgtcatagttccacaatcggaggatccagagagagccagtacttcagaaaggcag
aaaacggtgcaggtgcccaagaaagacaattctcgaggagtgaaacgcagtgctagccca
gattacaacaggaccaattctcctagctctgcaaaaaagcccaaagcgcttcagcatact
gaagcttcgtcagaaacgaagaagccacatagtaagtcaaagaagagacctttagaccag
gagcaacagctgaaatctgcacagtcgccatcaaccagcaaggctcacaccaggaagagt
ggggccgctgggagttcacggagtcagaagagaaagaggacagaaagttcttgtgtaaag
agtgctgctgggtccgaatcaactggtgccgaagagcgatctgcaaaacctaccaagctg
gcttcaaaatccgccgcctcagcaagagctggctgtagcaccatcactgattcttcctct
gctgcctctgcctcctcctcatcttctgctgtagcctccgtctcctccacggcaccagca
ggagccagggtgaagcaagggaaagatcagagcaaggccagacgttcccgctcagcatcc
agccccagtcccagaagaagcagcagggagaaggaacagagtaaaactggtggctcttca
aaatttgattgggctgctcgtttcagcccgaaagttagccttcctaaaacaaaactgtct
cttccagggtcttctaagtcagagacatcaaaacctggaccttctggattacaggccaaa
ttagcaagtttaaggaaatctaccaagaaacgcagtgagtccccacctgctgagctcccc
agtttgaggcggagcacacgccaaaagaccacgggctcctgtgctagtaccagccggcga
ggctctggcctgggcaaaagaggagcagctgaagctcggcgacaggagaagatggcagac
cctgaaggcaaccctgaggccgtgcacccgtcagctgcgcggccggaggaggcgccccaa
ggagcagcagcctctagttctgttgcaggggctgttggcatggccacctctggggagagt
gaatctgatgattccgagatggggcgattgcaagctttattagaggccaggggtcttcct
cctcacctgtttggtcctcttggtcctcggatgtcacaacttttccatagaacgattggc
agcggagctagttctaaggcccagcagcttctgcaaggactgcaagcaagtgacgaaagt
cagcagctccaggcagttattgaaatgtgtcagttgttggtcatgggaaatgaggagaca
ctgggaggatttcctgtcaagagtgttgttccagctttgataacattattgcagatggaa
cataattttgatattatgaaccatgcttgtcgagccttaacatacatgatggaagcactt
cctcgatcctctgccgtggttgtagatgctattcctgtcttcttagaaaagctgcaagtt
atccagtgtattgatgtggcagagcaggccttgactgccttggagatgctgtcacggaga
cacagtaaagccattctgcaggcgggtggtttggcagactgcttgttgtatctagaattc
ttcagcatcaatgcccaaagaaatgcactagcaattgcagccaattgctgccagagtatc
acaccagatgaatttcattttgtggcagattccctccccttgcttacccaaaggctaact
catcaggacaaaaagtcagtggaaagcacttgcctttgttttgcgcgtcttgtggacaat
ttccagcatgaggagaatttactccagcaggttgcctccaaagatttgctcacaaatgtt
caacagctgttggtggtgactccacccatcttgagttctgggatgtttatcatggtggtt
cgaatgttttctctgatgtgttccaactgtccgactttagcagttcaactaatgaagcaa
aacattgcagaaacgcttcacttcctcttgtgtggtgcctccaatggaagttgtcaagag
cagattgacctcgttccccgtagtcctcaagagctgtatgaactgacctctctgatttgt
gagcttatgccatgtttaccaaaagaaggcatttttgcagttgataccatgttgaagaag
gggaacgcgcagaacacagatggtgcgatctggcagtggcgtgatgaccggggcctctgg
catccctataacaggattgacagccggatcattgagcaaatcaatgaggatacgggaaca
gcacgtgccattcagagaaaacctaaccccttagccaatactagcactagtggatactca
gagttaaagaaggatgatgctcgagcacagcttatgaaagaggatccggacctggctaag
tcttttattaagacattatttggtgttctttatgaggtgtatagttcctcagcaggacct
gcggtcagacataagtgccttagagcaattcttaggataatttattttgcggatgccgaa
cttctgaaggatgttctgaaaaatcatgcggtttcaagtcacattgcttccatgctatca
agccaagacttgaagatagtagtcggagcgcttcagatggcagaaatattgatgcacaag
ttatctgatatttttagtgtttacttcagaagagaaggtgtgatgcatcaggtcaaacac
ctggcagaatccgaggctttgttgacaagtccaccaaaggtgtgtaccaatgggtcagga
tccttgggctccacagcgcctgtcaccagtgcagcggctacagcggccacgaatgcccca
gctgacgtgggctcacccagcttgcagcacagcagggatgattctttagatctgagccca
caaggtcgattaagtgatgttctgaaaagaaagcgactgccaaaacgagggccgagaagg
ccaaagtactcacctccaagagatgaagacagagtagacaatcaagctaaaagccccacc
actactcagtcacctaaatcttctttcctggcaagcttgaatccaaaaacgtggggaagg
ctcagcactcagtccaacagcaacaacattgagccagcacgaaccgcaggagttagtggt
cttgcccgggctgcctcaaaggacaccatatccaataatagggaaaaaattaaaggttgg
attaaggagcaggcccacaaatttgtagaacgttacttcagttctgagaacatggatggg
agcaaccctgctctgaatgtgcttcagagactttgtgctgcaactgaactactcaacctc
caggtggatggtggagctgagtgccttgtagaaattcgtagcattgtctcagagtcagat
gtttcatcgtttgaaatccaacacagtggatttgtgaagcagctgttactttacttaaca
tctaaaaatgaaaaagatgctgtgagcagagagatcagattaaagagattccttcatgtc
tttttttcttctccacttcctggagaagagcctattggcagagtagaaccagtgggtaat
gctcctttgttggcactagttcacaagatgaacaactgcctcagccagatggaacagttt
ccagtcaaagtgcatgatttccctagtggaaacgggacaggaggcagcttttctctcaac
agaggatcacaggctttaaaatttttcaacacacatcaattgaaatgccagctccagagg
catccagactgtgcgaatgtgaagcagtggaagggcggccctgtcaagatagaccccctg
gctttggtccaggctattgaaagatacctggttgtcagaggttatggaagagtgagagaa
gatgatgaagacagtgatgatgaggggtcagatgaggagatagatgagtctctggctgct
cagttcttaaattcaggaaatgtaagacacaggctgcagttttacattggagaacattta
ctaccgtataacatgactgtgtatcaggcggtccggcagttcagcatacagactgaagat
gaaagagaatccacggatgatgagagcaatcccctaggaagagctggaatttggacaaaa
actcatacaatatggtacaaacctgtgagagaggatgaagaaagtaataaagattgtgtt
ggtggtaaaagaggaagagcccaaacagctccaacgaaaacatcccctagaaatgcaaaa
aagcacgatgagttatggcatgatggagtgtgtccatcagtatcaaatcccttagaaatt
tacctcattcccacaccacctgaaaatataacttttgaagacccgtcattagatgtgatc
ctccttttacgagttttacatgccgtcagtcgatactggtattacttatatgataatgca
atgtgcaaggagattattccaactagtgaatttattaacagtaaattgacagcaaaagca
aatagacagcttcaagaccctttggtaatcatgacaggaaacatccctacatggcttacc
gagttaggcaaaacctgcccctttttctttccttttgatacacggcaaatgcttttctat
gtaactgcatttgatcgggaccgagcaatgcaaagattactcgataccaacccagaaatc
aaccagtctgattctcaagacagcagagttgcacctagattggatagaaaaaaacgcact
gtgaacagagaggagctgctgaaacaagccgagtctgtgatgcaggatctgggcagttcc
cgggccatgttagaaatccagtatgaaaatgaggttggcacaggtcttggacctacactg
gagttttatgcacttgtatctcaggaactgcagagagctgatttgggtctctggagaggt
gaagaagtaactcttagcaatccaaaaggaagccaagaagggaccaagtacattcaaaac
ctccagggcctatttgcacttccttttggtaggacagcgaagccagcccatattgcaaag
gttaagatgaagtttcgcttcttaggaaaattaatggccaaggctatcatggatttcaga
ttggtggaccttcctcttggtttacctttttataagtggatgctccggcaagaaacttca
ctgacgtcacatgatttgtttgacattgacccagttgtagccagatcagtgtatcaccta
gaagacatcgtcagacagaagaaaagacttgaacaagataaatcccagaccaaagagagt
ctacagtatgcattagaaaccctgactatgaatggctgctcggtggaagacctaggactg
gatttcactctgcccgggtttcccaacattgaactgaagaaaggagggaaggatatacct
gtcactattcacaacttggaggagtacctgagactggttatattctgggcactaaatgaa
ggtgtttctaggcaatttgattccttccgagatggtttcgaatcggttttcccactcagt
catcttcagtacttttacccagaggaactggatcagctcctctgtggcagtaaagcagac
acttgggacgccaagacgctgatggagtgctgcaggccggaccatggttacacgcatgac
agtcgggctgtgaagttcctctttgagatcctcagtagttttgataacgagcaacagagg
ttgtttctccagtttgtgaccgggagcccaagattgcccgttggaggattccggagtctg
aatccacctttgacaattgtccggaagacatttgaatcaacagaaaacccagatgacttc
ttaccctctgtaatgacttgtgtgaactatttaaagttgccggactattcaagcattgag
ataatgcgtgacaaactattgatagcagcaagagaagggcagcagtcattccatctctcc
tga
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integrated database retrieval system
