Ochotona princeps (American pika): 101522031
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Entry
101522031 CDS
T07609
Symbol
CDC40
Name
(RefSeq) pre-mRNA-processing factor 17
KO
K12816
pre-mRNA-processing factor 17
Organism
opi
Ochotona princeps (American pika)
Pathway
opi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101522031 (CDC40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
opi03041
]
101522031 (CDC40)
Spliceosome [BR:
opi03041
]
Complex C
Other components
Step II factors
101522031 (CDC40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
EIF3I
WDR55
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML_2
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_CAF1B_HIR1
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Beta-prop_EIPR1
ANAPC4_WD40
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
WDR54
WD_LRWD1
Beta-prop_NWD2_C
Motif
Other DBs
NCBI-GeneID:
101522031
NCBI-ProteinID:
XP_004580561
LinkDB
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Position
12:98124411..98186942
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AA seq
483 aa
AA seq
DB search
MSAAIAALAASYGSGSGSESDSDSEGGRCPLPAADSLMHLTKSPSAKPSLAVAVDSAPEV
AVKFGPENPFRTQQMAAPRNMLSGYAEPAHINDFMFEQQRRTFATYGYALDPSLDNHQVS
AKYIGSVEEAEKNQGLTVFETGQKKTEKRKKFKENDASNIDGFLGPWAKYVDEKDVAKPS
EEEQKELDEITAKRQKKGKQEDEKPGEEKTILHVKEMYDYQGRSYLHIPQDVGVNLRSSV
PPEKCYLPKKQIHVWSGHTKGVSAVRLFPLSGHLLLSCSMDCKIKLWEVYGDRRCLRTFI
GHSKAVRDICFNTAGTQFLSAAYDRYLKLWDTETGQCISRFTNRKVPYCVKFNPDEDKQN
LFVAGMSDKKIVQWDIRSGEIVQEYDRHLGAVNTIVFVDENRRFVSTSDDKSLRVWEWCF
SFNCSYVISGDGNGKLNIWDWKTTKLYSRFKAHDKVCIGAVWHPHETSKVITCGWDGLIK
LWD
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgtcggctgcaattgcggctctggccgcttcctacggttcgggttcggggtccgaatcc
gactcggacagtgaaggcggtcgatgtccgctgccagccgccgactctctcatgcatttg
accaaatcgccgtcggccaagccgtctctggccgtggcggtggactcggctccggaggtg
gcagtgaagtttggaccagaaaatccctttagaacacagcaaatggctgcccctagaaac
atgctttctggatatgctgaaccagctcatatcaatgactttatgtttgaacagcagaga
agaacttttgccacatatggttatgcattggacccttcattagataatcatcaagtgtct
gccaagtatatcggttctgtagaagaagctgaaaaaaatcaaggtttaactgtatttgaa
actggtcagaagaaaacagaaaaaaggaaaaagttcaaagaaaacgatgcatctaatatt
gatggtttcctgggaccatgggcaaaatatgtggatgaaaaagatgttgccaaaccctca
gaggaagagcagaaggagttggatgaaatcacagcaaagaggcagaagaaaggcaagcag
gaagatgagaaacccggggaggagaagacaatcttgcacgttaaggaaatgtacgactat
caaggcaggtcctatcttcacatacctcaggatgttggtgtaaatctgcggtcgagtgtg
ccacctgagaagtgttatcttccaaagaagcagattcatgtatggtctggacacacaaag
ggcgtcagtgcagtcagattgtttcctctctccggccatttgttgttgtcttgctccatg
gactgtaaaattaagctgtgggaggtttatggagaccgccgctgtctgcgaacatttatt
gggcacagtaaggctgtgagggacatctgcttcaatactgcagggacacagttcctcagc
gcagcctatgacaggtatctgaagctctgggacacggagactggacagtgtatatcaaga
tttacaaaccgaaaagtaccctattgtgtcaaattcaatcctgatgaggataagcagaat
ctctttgtggctgggatgtctgataaaaagattgtgcaatgggacatccgaagtggagaa
attgtgcaggagtatgatcggcatttgggagctgtcaacaccattgttttcgttgatgaa
aataggagatttgttagtacctctgatgataagagcctccgagtttgggaatggtgtttt
tctttcaattgcagctatgtgatttcaggagatggaaatggaaaattaaacatttgggat
tggaagaccacaaagctctatagtcggtttaaagctcatgataaagtgtgtataggtgca
gtgtggcatcctcatgaaacatctaaggtcataacgtgcggatgggatggtttgataaag
ttgtgggattaa
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