Ochotona princeps (American pika): 101522099
Help
Entry
101522099 CDS
T07609
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
opi
Ochotona princeps (American pika)
Pathway
opi03013
Nucleocytoplasmic transport
opi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101522099 (UPF2)
03015 mRNA surveillance pathway
101522099 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
opi03019
]
101522099 (UPF2)
Messenger RNA biogenesis [BR:
opi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
101522099 (UPF2)
mRNA cycle factors
P-body specific factors
101522099 (UPF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
DUF4835
Motif
Other DBs
NCBI-GeneID:
101522099
NCBI-ProteinID:
XP_036351074
LinkDB
All DBs
Position
16:58138411..58244812
Genome browser
AA seq
1123 aa
AA seq
DB search
MPAERKKPASMEEKESLLNNKEKDSFQSFREKEESLQLHQEAWERHQLRKELRSKNQNAP
DNRPEENFFSRLDSSLKKNTAFVKKLKTITEQQRDSLSHDFNGLNLSKYIAEAVASIVEA
KLKISDVNCAVHLCSLFHQRYADFAPSLLQVWKKHFEARKEEKTPNITKLRTDLRFIAEL
TIVGIFTDKEGLSLIYEQLKNIINADRESHTHVSVVISFCRHCGDDIAGLVPRKVKSAAE
KFNLSFPPSEIISPEKQQPFQNLLKEYFTSLTKHLKRDHRELQNTERQNRRILHSKGELS
EDRHKQYEEFAMSYQKLLANSQSLADLLDENMPDLPQDKPTPEEHGPGIDIFTPGKPGEY
DLEGGIWEDEDARNFYENLIDLKAFVPAILFKDNEKSQNKDSNKEDSKEAKESKDNKEVS
TPDDLELELENLEINDDSLELEGGDEAEDLTKKLLDEQEQEDEEASTGSHLKLIVDAFLQ
QLPNCVNRDLIDKAAMDFCMNMNTKANRKKLVRALFIVPRQRLDLLPFYARLVATLHPCM
SDVAEDLCSMLKGDFRFHVRKKDQINIETKNKTVRFIGELTKFKMFTKNDTLHCLKEQMM
RKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYKDLSKVTTEKVL
RQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDVGIHVVDGVLED
IRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGVNPDGSPSSLDP
PEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLEVWTKDHPFPIDI
DYMISDTLELLRPKIKLCNSLEESIRQVQDLEREFLIKLGLVNDKDSKDSMTEGENLEED
DEEEEGGAETEEGSDNDDDEGEEEEEENTDYLTDSNKENETDEENTEVMIKGGGLKHVPC
VEDEDFIQALDKMMLENLQQRSGESVKVHQLDVAIPLHLKSQLKKGPPLGGGEGEAESSD
TMPFVMLTRKGNKQQFKILNVPMSSQLAANHWNQQQAEQEERMRMKKLTLDINERQEQED
YQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNADLIFKTGGR
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgtaaaaagccagcaagtatggaagaaaaagaatctttactaaacaac
aaagagaaagactccttccaaagctttagagaaaaagaggaatctcttcagcttcatcag
gaagcttgggaacgacatcagctaagaaaggaacttcgtagcaaaaaccaaaatgctcca
gacaaccgacctgaggaaaacttctttagccgcctagattcaagtttgaagaaaaatact
gcttttgtcaagaaactaaaaactattacagagcaacagagagactccttgtcccatgat
tttaatggcctgaatttaagcaagtacattgcagaagctgtagcttctattgtggaagcc
aagctaaagatctccgatgtgaactgtgctgtgcacctgtgctctctcttccaccagcgc
tatgctgactttgccccatcacttcttcaggtctggaaaaagcattttgaagcaaggaaa
gaggaaaaaacacctaacattaccaaattaagaactgatttgcgttttatcgcagaattg
acaatagttgggatttttacggacaaggagggcctttccttaatatatgaacagctaaaa
aatattattaatgctgatcgggaatctcacactcatgtttcggtggtgattagtttttgt
cgacattgtggtgatgatattgctggacttgtaccaaggaaagtaaaaagtgctgcggag
aagtttaatttgagttttcctcctagtgagattattagtccagagaaacaacagcctttc
cagaaccttttaaaagagtactttacgtctttgaccaaacacctgaaaagggaccacagg
gaactccagaatactgagagacaaaacaggcgtattcttcattctaaaggagagctaagt
gaagatagacataaacagtatgaggaattcgccatgtcttatcagaaactgctggccaat
tctcagtctttagcagacctcttggatgaaaacatgccagatcttcctcaggacaaacca
acaccagaagaacatggacctggaattgatatatttacgcctggtaaacctggagaatat
gacttggaaggtggcatatgggaagatgaagatgctcggaatttttatgagaacctcatt
gatttgaaagcttttgttccagccatcttgtttaaagacaatgaaaaaagtcaaaataaa
gattctaataaagaggattccaaagaggcaaaagaatctaaggataataaggaggtgtca
actcctgatgatctggaacttgagctggagaatctggaaattaacgatgacagcttggag
ttagagggtggagatgaagctgaagatcttacaaagaaactcctcgatgaacaagaacaa
gaggatgaagaagccagcactgggtctcacctcaagctcatagtggatgctttcctacag
cagttgcccaattgtgtcaaccgggatctgatagacaaggcagcaatggatttttgcatg
aacatgaacacaaaagcaaacagaaagaagttggtacgggcgctcttcatcgttcctaga
caaaggctggatttgttaccgttttatgcaagattggttgccacattgcatccctgcatg
tctgatgtagcagaagatctttgttccatgctgaaaggggatttcagatttcatgtacgt
aaaaaggaccagatcaatattgaaaccaaaaataaaactgttcgtttcattggagaatta
accaagtttaagatgttcacaaaaaatgatacattacattgcttaaaggaacaaatgatg
agaaagaaacaagccatgcatcttgatgcaagatatgtcacaatggtggagaatgcatat
tactactgcaacccccctccagctgaaaagacagtgaaaaagaaacgtcctcctctccag
gagtatgtgcggaaacttctgtacaaagacctttctaaggttaccactgagaaggttttg
agacagatgcggaagttgccctggcaggaccaagaagtgaaagattatgttatttgttgt
atgataaacatttggaatgtaaaatataatagtattcactgtgtagccaacctcttagca
ggactagtgctctaccaagaagatgttgggatccacgttgtggatggagtcttagaagat
atccgattaggaatggaggtcaaccaacctaaatttaatcagagacgtatcagcagcgcc
aaattcttgggagaactttataattaccgcatggtggaatcagctgttatttttaggact
ctgtattctttcacttcatttggtgttaatcccgatggttctccaagttccctggaccct
cctgagcatcttttcagaattcggcttgtttgcactattttggatacctgtggccagtac
tttgacagaggttccagtaaacgaaaactcgattgcttccttgtatattttcagcgttat
gtttggtggaagaaaagtttggaggtttggacaaaagaccatccatttcctattgatata
gattacatgatcagtgatacactagaactgctaagaccaaagatcaaactctgtaattcc
ctggaagaatccatcaggcaggtacaagacttggaacgtgaattcttaataaaactgggc
ctagtaaatgacaaggattcaaaagattctatgactgaaggggaaaatcttgaagaagat
gatgaagaagaagaaggaggtgctgaaacagaggaaggctctgataatgatgatgatgag
ggagaagaagaggaggaggagaacacagattaccttacagattccaataaggagaatgag
actgatgaagagaacactgaggtaatgattaaaggaggtggactgaagcatgtgccttgt
gtagaagatgaggactttattcaagctctggataaaatgatgctggaaaatcttcagcaa
cgaagtggagaatctgttaaagtgcaccagcttgatgttgctattcctttgcatctcaaa
agccaattgaagaaaggtcccccgcttggtggtggggaaggagaggcagagtcctctgac
accatgccattcgtcatgctgacaagaaaaggcaataaacaacagtttaagatccttaat
gtgcccatgtcttcccaacttgcggcaaatcattggaaccagcaacaagcagaacaggaa
gagagaatgagaatgaaaaagctcactctagatatcaatgaacggcaagaacaagaagat
tatcaagaaatgttacagtctcttgcacagcgtccggctccagcaaacaccaatcgtgag
cgacggcctcgttaccaacatccaaagggagcacctaatgcagatctaatctttaagact
ggtgggaggtaa
DBGET
integrated database retrieval system
