Ochotona princeps (American pika): 101522136
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Entry
101522136 CDS
T07609
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X3
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
opi
Ochotona princeps (American pika)
Pathway
opi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101522136 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
opi03021
]
101522136 (PCF11)
03019 Messenger RNA biogenesis [BR:
opi03019
]
101522136 (PCF11)
Transcription machinery [BR:
opi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
101522136 (PCF11)
Messenger RNA biogenesis [BR:
opi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
101522136 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
Motif
Other DBs
NCBI-GeneID:
101522136
NCBI-ProteinID:
XP_004589896
LinkDB
All DBs
Position
1:complement(49812221..49837992)
Genome browser
AA seq
1552 aa
AA seq
DB search
MSEQTPAEAGAAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPSTPGTVV
SSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETSNLGPGPAPSKLHVSQIAPMAVKVPHQVPVQPEKSRPGPSQVQDLKGTNRDPRLNR
MSQHSSHGKDQSHRKEFLMNTLNQSDIKTSKTVPSEKLNSSKQEKSKSSEKVTKKELDQL
DSKSKSKSKSPSPLKNKFSHTKDLKNQESESARLSDMNKRDPRLKKHLQDKTDGKDDDGK
DKRKTVEKKDKDEHMKSEHRMVGSRNKIINGVVQKQDVITEESEKQGTKPGRSSTRKRSR
SRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTSTPKSGKIRQSGVKQSHMEEFTPPSREE
RNTKRSTKQDIRDPRRMKKVEDERPQETANQHSTKSGTEPKDNVENWQSSKSTKRWKSGW
EENKSLQQSDEHGKSPHLRHRDSWSSTKGILSPRAPKQQHRLSVDANLQIPKELTVASKR
ELLQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGVREEQRSPFNDRFPLKRPRYEDSD
KPFVDSPGSRFAGLDTNQRLTALAEDRPLFDGPSRPSVARDGPTKMIFEGPNKLSPRIDG
PPTPGSLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGAPLRFEGPIGQAG
GGGFRFEGSPGLRFEGSAGGLRFEGPGGQPVGPLRFEGHRGQPVGGLRFEGPHGQPVGGH
RFDSPRGQPVGGLRFEGGHGPAGAGIRFDGPHGQPGGVIRFEGPLLQQGVGMRFEGPHGQ
SVAGLRFEGQHSQIGGNLRFEGPHGQPGVGVRFEGPLVQQGGGMRFDGPNVPGGGLRIDG
PLGQGGPRFEGCHTLRYDGQPGQPSLLPRIDGLHGQPGPRFERTPGQPGPQRFDGPPGQQ
IQPRFDGVPQRFDGPQHQQASRFDMPLGLQGTRFDNHPSQRLESAVPFGQPGPFSDPPGG
AFNAPSQGLQFQRHEQMFDSPQGPNFNGPHGPGNQNFSNPLNRAGHYFDEKNLPNSQFGN
FGNLPVTVGNIQASQQVLPGVAQPLAFGQGQQFLPVHPQNPGSFVQNPSGALPKAYPDNH
LSQVDVNELFSKLLKTGILKLSQPDSATTQVNEAAAQPSTEEEEDQNEDQDVPDLTNFTI
EELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKVTHRR
WYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSVPAGPAGAVESC
EICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDCTPSPSKTPAENPL
NIMLNIVKNELQEPCESPKVKEEQIDTPPACTEESLATPTEIKTENDTVESV
NT seq
4659 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcagacgccggccgaggccggtgctgccggggcccgggaggacgcctgtcgg
gattatcagtcatcgctggaagacctgaccttcaatagcaaaccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccttcctcagagaagcttcctgttatgtaccttatggattctatc
gtgaaaaacgttggaagagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactagaaaaagtttatttaaattacgttcc
acatgggatgaaatattccctttgaagaaactttatgccctggatgtcagagttaattca
ttagatcctgcttggcctattaaacctctgccccccaatgtgaatacatctagcatccac
gtgaatcctaaatttttaaataaatcgccggaagagccttccacacctggcacagtggtc
agttcccccagcatctccactcctccaattgttcctgatatacaaaagaatcttacccag
gaacaactaataagacagcagttactggcaaaacaaaaacagttgttagaacttcagcag
aaaaagctggagctcgaactagaacaagctaaggcacaattggcagtttctcttagtgtt
cagcaggagacatccaatttaggtcctggacctgcaccatccaaattacacgtctcacaa
attgcccctatggcagtcaaagttcctcatcaagttcctgtgcaaccagagaaaagccgc
ccaggtccgtcccaagttcaggatttgaaaggcactaaccgggatccccgccttaacagg
atgagtcagcattcctctcatggaaaagatcaaagtcacaggaaagaatttctaatgaac
acgttgaaccagtctgatattaagacaagtaaaactgtaccctctgaaaaactaaactcg
tctaagcaagagaaaagtaaatcaagtgaaaaagtaactaagaaagaacttgatcaatta
gattctaaatccaaatctaaatctaaatcaccatcacctttgaaaaataaattttcgcac
acaaaagacttgaaaaatcaagaatcagaaagtgcaaggttgtctgatatgaataagagg
gatccacggttaaaaaaacatcttcaggataagactgatggcaaagatgatgatgggaaa
gataagagaaaaactgtagagaaaaaggataaagatgagcacatgaaatctgaacacaga
atggttggaagtagaaataaaatcataaatggtgttgtacaaaaacaggacgtaataaca
gaagaatcagaaaaacaggggacaaaaccagggagatcaagtactagaaagcgatcaagg
tcacgatcacccaagtctcggtcaccaattatacattcaccgaagagaagagataggcgg
tcacccaaacgaaggcaaaggagtatgtctccaacttcaacacctaaaagtggaaaaatt
cgccagtcaggagttaagcagtcacatatggaagagtttacgccaccttccagggaagaa
agaaacacaaaaagaagtactaagcaggatattcgtgatccaagacgaatgaaaaaggtt
gaagacgaacgaccacaagaaactgcaaatcagcattctacaaagtcgggtactgaacca
aaagacaatgtagaaaattggcaaagttccaagtctaccaaaagatggaaatctggttgg
gaagaaaataaaagcttacaacagagtgatgaacatggtaaatctcctcatctaaggcat
agggacagctggtcaagcactaaaggaatcttgtcacctcgagccccaaagcagcagcat
cgactaagtgtagatgctaatcttcagattcctaaagagttaactgtggcaagcaaaaga
gagttgcttcaaaagacgagtgaacgtttagcatcgggtgaaattacccaagatgagttc
cttgttgttgtgcatcaaattcgacagctatttcagtatcaagaaggtgtacgagaagag
cagagatctccattcaatgatcgttttccacttaagcgacctagatatgaagattcagat
aaaccatttgtagatagcccaggatcaagatttgccggccttgatacaaatcagcgactt
acagctttagctgaagatagaccgttatttgatggacctagcaggccatcagtagccaga
gatggtccaaccaagatgatttttgaaggacctaataaattaagccctagaattgatgga
cctcctacaccaggttctcttcgcttcgatgggtcaccaggacaaatggggggaggaggc
cctttgagatttgaagggccacagggtcagctaggaggtggctgtcctttgagattcgaa
ggtcctccagggccagtaggggctcctctgcggtttgaggggccaattggccaagcagga
ggaggtggttttcggtttgagggatccccaggtctgagatttgagggatctgcaggtggt
ttacgatttgaaggaccaggaggccagcctgtgggccccctcagatttgaggggcatcgt
ggtcaacctgtgggagggctaaggtttgagggaccacatggtcagcctgtgggcggacat
agatttgatagtcctcgaggtcagcctgtaggtggacttagatttgaggggggtcatggg
ccagcaggggctgggattaggtttgatggacctcatggtcaaccagggggcgtaatcaga
tttgaaggccctttgttacagcaaggagttggaatgaggtttgagggcccccatggtcag
tcagtggctggtctgaggtttgagggacaacatagtcaaattggtgggaacctgaggttt
gagggtccacatggtcaaccaggggtcggcgtgagatttgaaggacctttagttcaacaa
ggaggtggaatgaggtttgatggtcctaatgtaccgggaggtggcctaagaattgacggt
cctcttggtcagggtggtccaagatttgaaggttgtcatactttgagatatgatggacag
ccaggtcagccatcacttttgccacgaattgatggattacacggtcagccaggtcctagg
tttgaaagaactcctggtcagccaggtccacagaggtttgatggaccacctggacaacag
atacaaccaagatttgatggtgtacctcaaagatttgatggtccacaacaccagcaagca
tcaaggtttgatatgcctcttggtctccaaggcacacgatttgacaatcacccctcacaa
aggcttgaatcagcagtgccttttggtcagcctgggccatttagtgacccaccgggtggt
gctttcaatgctccgtcccaaggactgcagttccagagacatgaacaaatgtttgattca
cctcaaggaccaaattttaacggaccgcatggccctggaaatcagaatttctcaaatccc
cttaacagagctggacactattttgatgaaaagaatctcccgaattctcagtttggaaac
tttggcaatttaccagtaactgtaggaaatattcaggcctctcaacaggttctacctggt
gttgctcagccactagcatttggccaaggacaacagtttttaccagttcatccacaaaat
cctggatcatttgttcagaatccctcaggagctcttcctaaggcatatcctgataatcat
ctcagtcaggtggatgtaaatgaattattttcaaaactgctaaaaacaggaattctgaaa
ttgtcccagcctgactcagctacaacacaagtaaatgaagcggctgctcaaccttccact
gaagaggaggaagatcaaaatgaagatcaggatgttcccgatcttactaattttacaatt
gaagaattgaaacaacgttacgacagtgttataaatcggctgtatactggtattcagtgt
tactcctgtggaatgaggtttacaacatcacaaacagatgtatatgcagatcacttggac
tggcattaccggcagaatagaactgagaaagatgttagcagaaaagtcactcataggcgt
tggtactacagtttaacagactggatagaatttgaggaaatagctgatctagaagaacgt
gcaaagagccagttttttgaaaaggtccatgaagaagttgtgcttaaaactcaggaggct
gctaaagaaaaagagtttcaaagtgtacctgctggaccggctggagcagttgagagttgt
gaaatttgtcaagaacaatttgaacaatactgggatgaagaagaagaggaatggcattta
aaaaatgctatcagagtagatggaaagatttatcatccatcatgttatgaagattatcaa
aatacatcttcatttgattgtacaccatctcccagcaagacaccagctgaaaacccattg
aacattatgttgaacattgtcaaaaacgaattacaggaaccctgtgaaagtccaaaagtt
aaggaagaacaaattgacaccccaccagcttgtacagaagaaagccttgcaacacccact
gaaattaaaacagaaaatgatacagtcgagtccgtttaa
DBGET
integrated database retrieval system
