Ochotona princeps (American pika): 101522141
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Entry
101522141 CDS
T07609
Symbol
PABPC4
Name
(RefSeq) polyadenylate-binding protein 4 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
opi
Ochotona princeps (American pika)
Pathway
opi03015
mRNA surveillance pathway
opi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101522141 (PABPC4)
09123 Folding, sorting and degradation
03018 RNA degradation
101522141 (PABPC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
opi03019
]
101522141 (PABPC4)
03041 Spliceosome [BR:
opi03041
]
101522141 (PABPC4)
Messenger RNA biogenesis [BR:
opi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
101522141 (PABPC4)
mRNA cycle factors
Stress granule specific factors
101522141 (PABPC4)
Spliceosome [BR:
opi03041
]
Complex C
Other components
Complex C specific factors
101522141 (PABPC4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_MUD2_C
RRM_5
RRM_7
RRM_ACIN1
RRM_10
RBD_RDR6
RRM_3
ApbA_C
POP1_C
Motif
Other DBs
NCBI-GeneID:
101522141
NCBI-ProteinID:
XP_004591606
LinkDB
All DBs
Position
13:complement(30161975..30178784)
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AA seq
644 aa
AA seq
DB search
MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGEEVDDESLKDLFSQFGKTLSVKVMRDPTGKSKGFGFVSYEK
HEDANKAVEEMNGKEIGGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRP
PYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAIRQAGPRPTLRHLAPTGSECPDRLAMDF
GGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVAPYKYASAVRSPHPGIQPLQ
APQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHANLAGKITGMLLEIDNS
ELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAAATS
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctgcggccagcagctaccccatggcctccctgtacgtgggtgacctgcactcg
gacgtcactgaggccatgctgtatgaaaagttcagccctgcggggcctgtgctatccatc
cgggtctgccgtgatatgatcacccggcgctccctgggttatgcctacgtgaacttccag
cagccagccgatgctgagcgggccttggacacgatgaacttcgatgtgattaagggaaag
ccaatccgcataatgtggtctcagagggatccctctctgagaaagtctggcgtggggaat
gtcttcatcaagaacctggacaaatctatagataacaaagcactttatgacacattttct
gcttttggaaacatcctatcctgtaaggtggtgtgtgatgagaacggctctaagggttat
gcctttgttcactttgagacgcaagaggctgccgacaaggccatagagaagatgaacggc
atgctcctcaatgaccgcaaagtgtttgtaggcaggtttaagtctcgcaaagagcgggaa
gctgaacttggagccaaagccaaggaattcactaatgtttatatcaaaaactttggggaa
gaggtggatgatgagagtctgaaagatctgtttagtcagtttggtaaaacgctgagtgtg
aaggtgatgagagatcccactgggaaatccaaaggctttggttttgtgagttatgagaag
catgaagatgccaataaggccgtggaagagatgaatggaaaagaaatcggcgggaaagtc
atttttgtaggccgtgcacagaagaaagtagaacggcaggccgaattaaaacggaaattc
gagcagctgaaacaggagcgaattagtcgataccagggtgtaaacctctacattaagaac
ttggatgacaccattgatgatgagaaattacgaaaagaattttctcctttcgggtcaatc
accagtgcaaaggtgatgctggaggatggaagaagcaaagggtttggctttgtttgcttc
tcatctcctgaagaggctaccaaagcagtcactgagatgaatggacgcatcgtgggctcc
aagccactgtacgttgccctggcccagagaaaggaagagagaaaggcccatctgaccaat
cagtacatgcagcgtgtggctggaatgagagcactccctgccaatgccatcttaaatcag
ttccagcctgcagctggtggctattttgtgccagcagttccacaggctcagggaagacct
ccttattacacccctaaccagctagcacagatgaggcctaatccacgctggcagcaaggt
gggagacctcaaggcttccaaggaatgccaagtgctatacgccaggctgggcctcgtcca
actcttcgccatctggctccaactgggtctgagtgcccggaccgcttggctatggacttt
ggtggggctggtgccgcccagcaagggctgactgacagctgccagtctggaggtgttcct
acagctgtgcaaaacctagcacctcgtgctgctgttgctgccgctgcccctagggcggtt
gcgccatacaaatatgcgtccgctgtccgcagtcctcaccctggcatacagcctctgcag
gctccccagcccgctgtccacgtgcaggggcaggagcctctgaccgcctccatgctggcc
gcagcacccccccaggaacagaagcagatgctgggagaacgattgttccccctcatccaa
acgatgcacgcaaacctggccgggaagatcacggggatgctgctggagatcgacaactcg
gagctgctgcacatgctggagtcccccgagtcccttcgctccaaggtggatgaagctgtg
gcagttctgcaggctcatcatgccaagaaagaagctgcccagaaggtgggcgctgtcgct
gctgctacctcttag
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