Ochotona princeps (American pika): 101522265
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Entry
101522265 CDS
T07609
Symbol
RIF1
Name
(RefSeq) telomere-associated protein RIF1
KO
K11138
telomere-associated protein RIF1
Organism
opi
Ochotona princeps (American pika)
Pathway
opi04550
Signaling pathways regulating pluripotency of stem cells
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04550 Signaling pathways regulating pluripotency of stem cells
101522265 (RIF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
opi03032
]
101522265 (RIF1)
DNA replication proteins [BR:
opi03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
101522265 (RIF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rif1_N
GNC1_N
NICE-1
Motif
Other DBs
NCBI-GeneID:
101522265
NCBI-ProteinID:
XP_004577393
LinkDB
All DBs
Position
7:39288534..39352396
Genome browser
AA seq
2372 aa
AA seq
DB search
MTAPGRSPLAPLLETLEDSSASPGEQVDAYLALTSRMTGEDGKEILTEVEKKILRLYKVL
RTHIASQNLELSSAALQALGFCLYNPKVTSGLSEANIQELLSQLNDHVKSSDKNVRTRAL
WVISKQTFPAESVAKVVPDIIDSLEMVYNKGEVHSAIIDFEALNVIIRLIEQAPVQMGEE
SVRWAKIVIPLVVHSAQKVHLRGATALEMGMPLLLQKQQEIACITEQLMTTKLFSELQKL
FMNKNETYVLKLWPLFVRLLGKTLHRSGSFINSLLQLEELGFRSGTPVIKKIAFIAWKSL
IDNFALNPDILCSAKRLKLLMQPLSSIHVRTETLALTKVEVWWYLLIRLGPHLPAHFEQV
CVPLIQSTISTDPSASSRGASSPGLSPMTPVSKGASPYGVAVNPRMNLSSNLGGMATIPS
IQLLGLEMLLHFLLGPEVLSFAKQNKLVLNLEPLEHPLISSPPFFSKHANTLITAVHDSF
VAVGRDASDAILSAIWKELISLVKSVTESGNKKERPGSEVLTLLLKSLEGIVKSEAFPVS
KSLVLMEIAIKGLPQKVLGSPAYQVANMDILNGTPALFLIQLICSENFMECGIADEKFFL
NLETLVACVLSGPTSPLAFSDSVLSVINQNAKQLENKEHLWRMWSIIVTPLTELINQTNE
VNQGDALEHNFSAIYGALTLPINHIFSTQKFPAATMKTLLKAWSELYRAFARCAALVATA
EENLCCEELCFKILSSVEEEDFANLLFLERIIHVITVMVDCIDFSPYNIKYQSKVKSPQR
PSDWAKKKKEPLGKLASLFKLIVRVIYAFHTLSFKEVHSDTLLAVGNSVSSILSSILGHI
SLPSIMQKIFATLTRPLALFFENAKLDEAPRVYSCLSIKLEKLLGEIITCLQFSYTGSYD
NEFLEQLSPLLCIIFLHKNKQIRKQSAQFWNATFAKVTTLIYPEDLKQVLRQAKQKSLLL
LPGLENVEIMEESSGPYSDAVENSQLSLKISGMERKSSGKRDSFLSQTKDKKDTKTSAKM
RLDSSLKAKNDISLEEEESVDFVFISPEENEAKERILTEHQKEVLKTKRCDIPTMYNNLD
VSQDTLFSNQYSQEESMEVSTSTRKTKEDSKVMEEQMKSHIVRPQDVMGNCGTDEHLPKA
PLSNNECSCINESNPEISSINNDGRKGALSSSKSISTECESNADSAFIGSSGSISNTTVS
GTPLQPTSRRQSFITLEKFDGSENRPFSPSPLNDLSSSVSVRNNQENMNKTDTPSKTKTR
EVVSKCDSDKLVNGIKGSGRRWSKAEQSGNKRSKPLLRSDHEKNTQESIEGVITSENNPA
GLLSQTECALDGRPEYIEEDEDSKLKSATENAVLASSTVEEKSTGINLDSKENTPPAVIA
ADQMVNEESQIHVTPNLKTLRRSSRRRSDMADFSADSQDKENNHQKRERRSKEEEKSLQK
SPFHVKEDVLPKQKLASEQTAQENTTNKDNNIHQIISGETSATSEIDQNKRKSDIENISS
ECDGSQDASEKSSEKTLRGRTRYQTRRASQGLLSSIENSESDSSEAKEDSSRKKRSGKWK
NKGNDSLDIEEQEEKMVKHECVTVETQRHDNKGVSEDDSDMKSPTCQKDDSSVMPQDSAK
SSDLLHVSDDVSNTQEEKNKPTKCASPPLPESNLRTRNASKRLHRRESDDNSLGESSKAG
TSDSSLLSEKSLQTLECQHKRSRRVRKSKGCDCCGEKSQSQEKSVTGLKNTENDEKMTGV
EKIDVQTPVNVSESSSLDSKVKVLDEQHSVNFHFDLKEETDIINDSLVVPHSHLKDSVIQ
ESFPSPISLEKNHSVVSAEGEIFSSQEPANKKFRAVGPCLSDPKDIEQKCSLETKEDTLE
VNSQIKCNVINESEECKVLAESNPEEVEGVMLDAEDGKGEIISSEQENTKSEVFGKVVVT
ENNETSEAPEAVTAEILNGEKASTEEFNSSISLSDNNIPVKRDAQGQIPEQAVGEVSRGS
DKTSDETEEHGGPSGETDTSMDTCDEQVSSDVDAETEPVREAEDRDMTVATSKTEETEIN
NEMNIGADRIVPGTPAMNTEEQKVDSEKTEVNNDLDKKVNNELEETKLEDRQIIVGDDIL
PEVHESSNKMDESFQSLTSETMVSDLIREDNGSPQKPRECDPLLMSVNASPSCMQTRCVW
SPLASPSTSILKRGLKRSQEDENSSPVNKFTWAIFQLDGIFTINISHNFVVLSSFLRARG
LGQLIRAKNIKTIGDLSTLTASEIKTLPIRSPKVSNVKKALRVYHEQQMKSHGLEEIPVF
DISDRTVNGIENKSDEERLASDLMDPVTLEPPFSKNLMAQISALALQLDSEDLHNYSGSQ
LFEMHEKLGSMANCIIKNLQSRWKSTTHENSV
NT seq
7119 nt
NT seq
+upstream
nt +downstream
nt
atgacggccccgggtcggagccccctggcgccgctgttggagactctggaggactcttcc
gcctcccctggagaacaggtggacgcttatctggctctgaccagtcgtatgactggagaa
gatggcaaagaaattcttacggaggttgagaaaaaaattcttcggttgtataaagtttta
aggactcatattgccagtcagaatttggagctgagtagtgctgctctacaggccttgggc
ttctgcttgtataatcctaaagttacctcaggattgtcagaggcaaatattcaggagctg
ctttctcaattaaatgatcatgttaaaagttcagacaaaaatgttcgtaccagggcgcta
tgggtgatatccaagcagacgtttcctgctgagagtgtcgccaaagtggtacccgacata
attgattcattagaaatggtatataataaaggagaggtgcattctgctattattgatttt
gaagcgttaaatgttatcataaggctaattgaacaagccccagttcaaatgggagaagag
tcggtgcggtgggccaaaatagtcataccgttagtggttcattcggcacaaaaagttcat
ttgcggggtgcaaccgctttggagatgggaatgcctttgttgctccaaaaacaacaagaa
atagcatgtattacggagcagcttatgactactaaattattctcagagctgcagaagcta
tttatgaacaaaaatgagacatacgtgttaaaattatggcctttgtttgtcagacttctt
gggaagaccttacatcgaagtggaagtttcatcaattctttattgcagttagaagaacta
ggatttcgtagtggaacacctgtgattaaaaaaatagcttttattgcttggaagagctta
atagataattttgctttaaatccagatatactatgtagtgcgaaaagactcaaattgtta
atgcagcctttaagttccatccacgtgagaacagaaacactagcattaacaaaagtagaa
gtgtggtggtatttactgataagacttggacctcatcttcctgctcattttgaacaggtt
tgtgtgcctctgattcagagcacaataagcaccgatcctagtgcttcctctcgtggagct
agttctcctggtctaagtcctatgactcctgtatccaaaggtgcttccccgtacggagtt
gctgtaaaccccaggatgaacttgagttctaatttaggtggaatggctacaatcccttcc
attcaacttttgggacttgaaatgttgcttcattttctgttgggtccggaagtcttgagt
ttcgctaagcaaaacaagcttgtattgaacttagagccacttgagcatcccttgatcagc
agccctccttttttctcgaagcatgcgaatacacttatcactgctgttcatgatagcttc
gttgcagttggaagagatgcttctgatgcaattctcagtgctatctggaaggagctaatt
agtttggtcaagtcagttactgaatcaggtaataaaaaagagagaccaggttctgaggtt
ttgactcttttactaaaatctttggaaggcatagtgaagtcagaagcatttcctgtttca
aaatcactggtcctcatggaaattgcaattaaaggacttccccagaaagtattaggttca
ccggcatatcaggttgctaatatggatattcttaatgggactccagctttgttcttaatt
cagttaatttgtagtgagaatttcatggaatgtggcatagcagatgaaaagttttttctc
aatctggagacacttgtagcctgtgtgctttctggtccgacttcaccactggcttttagt
gactctgttctaagtgttataaatcaaaatgcaaagcaattggagaacaaggaacatctg
tggagaatgtggagcattatagtcacgccattaactgaactgattaatcagactaatgaa
gtgaatcaaggtgatgccttggaacataattttagtgccatctatggtgcattaacctta
ccaataaatcatatattttcaacacagaaatttccagcggccactatgaaaaccttactt
aaagcttggtcagaattatatagagcatttgcccgttgtgcagctttggtggcaacagca
gaagaaaacttgtgttgtgaggagctttgctttaagattttatccagtgtggaagaggaa
gactttgctaatttgttatttttagagaggatcattcatgtaattactgtaatggttgat
tgcattgatttttcaccgtataatattaaataccagtccaaagttaaatcaccgcagaga
ccttcagattgggccaaaaagaagaaggagcccctagggaaattggcttctttatttaaa
cttattgtgagagtgatctatgctttccacactctgagcttcaaagaagttcattcggac
actctgctggctgtgggcaactcagtcagcagcattctctccagtatacttggacatatt
tcattaccttctataatgcaaaaaatatttgcaactttaacaagaccgctggcattgttt
tttgaaaacgcaaagcttgatgaagctcctagagtgtatagttgtctgagcatcaagtta
gaaaagctactaggagaaattattacctgtctacaattcagctacactggatcttacgac
aatgaatttcttgaacaactctccccactgttatgcataatatttctgcacaagaataaa
cagatacgcaaacagagtgctcagttctggaatgccacatttgctaaagtgacaacatta
atttatcctgaggacttaaaacaagtactgagacaagccaaacagaaatctctgcttctg
ttacctggattggaaaatgttgaaatcatggaggaatccagtggaccatattcagatgca
gtagaaaattcacaattaagtttgaagattagtggcatggaaagaaaatcaagtggaaaa
agagattcttttttgtcacaaacaaaagataaaaaagatacgaagacatcagccaaaatg
agattagactcatctttaaaagcaaaaaatgacatatctttagaagaagaagaatctgtt
gactttgtgtttatatcaccagaagaaaatgaagcgaaggagagaatcttaacagaacat
caaaaagaagtacttaaaacaaagcgatgtgatattcccacaatgtataataatctggat
gtgtcacaagatactttgttttctaatcagtatagtcaagaagaatctatggaagtttca
acttctaccagaaaaacaaaggaagattcaaaggtaatggaggagcaaatgaagagtcat
attgtcaggcctcaggatgttatgggaaactgtggtacagatgagcatcttccaaaggct
ccgctttcaaataatgagtgtagttgtattaatgaaagcaatccagaaatatccagcatt
aacaatgatggcaggaaaggagctttaagttcatcgaagagtatctctactgaatgtgaa
tctaatgcagacagtgctttcattggcagtagtggctccatttctaacaccactgtgtct
ggaactcctctacagcctacaagtcgcaggcaaagtttcattaccttggagaaatttgat
ggttcagaaaatagaccttttagtccttccccactgaacgatctgtcgtcatctgtttca
gtgagaaataatcaggaaaatatgaataaaacagatactccatcaaaaacaaagacgaga
gaagttgtttcaaaatgtgactctgataaattagtgaatggaattaagggatctggccgg
aggtggagtaaagcagaacaatccgggaataaaaggtctaagcccttattgaggtctgat
catgagaaaaacactcaggaatctattgaaggtgtaataacttcagaaaataatcctgct
ggtttgctcagtcaaaccgaatgtgcattagatggtcgtcctgagtacatagaagaagat
gaagattctaagcttaaatctgcaacagaaaatgcagtattggcaagtagtactgtagaa
gagaaaagtacagggattaatttggattccaaagaaaacacaccccctgcagtaatagca
gcagatcagatggtaaatgaggaaagtcagattcatgtgactccaaatctgaaaaccctt
aggaggtcatcaagacggcgttctgacatggcagatttcagcgctgatagccaggataaa
gagaataatcatcaaaaaagggaaaggcgtagtaaagaagaagaaaaatctctgcaaaaa
agtccctttcatgtaaaagaggatgtgttaccaaaacaaaaactggcttcagagcaaact
gcacaagaaaatacaactaacaaagacaacaatatacatcagataatttctggggaaacc
agtgctaccagtgaaattgaccaaaataaacgaaagtcagacattgagaatatatcttca
gagtgcgatggttcccaggatgcttcagaaaaatcgtctgagaaaactttaagagggcga
acacgttaccagacaagaagagcctctcagggcttgctttccagcattgaaaactcagaa
tctgatagttctgaggcaaaagaggacagctctagaaagaagagatctggaaaatggaaa
aacaaaggcaatgatagtcttgacattgaagagcaagaagagaaaatggtaaaacatgaa
tgtgtgacagttgaaactcagaggcatgataataaaggagtctcagaagatgattcagac
atgaaatctccaacttgtcaaaaagatgacagtagtgtaatgcctcaggattctgcaaaa
tcctcagatttgttgcatgtttctgatgatgtatcaaatacacaagaagagaagaataaa
cctaccaaatgtgcaagtccacctttgccagaatcaaatctaaggactagaaatgccagt
aagagactgcataggcgtgagtctgatgataacagtttgggagaatcgtcaaaagcaggg
acatcagacagttctttgctttctgaaaaaagtcttcaaactcttgaatgccaacataag
agaagtaggagagtgcggaaatcaaaaggttgtgattgctgtggtgaaaaatcccagtca
caagagaaatcagtaactggtttaaagaatactgaaaatgatgaaaagatgactggtgta
gaaaagatagatgtacaaacacctgtaaatgtatcagaaagttctagtctggattccaaa
gtaaaagtgttagatgaacaacacagtgtaaattttcactttgatctcaaggaagaaact
gatattattaatgattcattagttgtgcctcactctcacttgaaagacagtgttattcaa
gaatcttttccttctccaataagtcttgagaagaatcatagtgttgtttctgctgaaggg
gaaatatttagtagccaagagccagcgaataagaaatttagagctgttggaccatgtcta
agtgatcccaaagacattgaacagaaatgttctttagagaccaaagaagataccctggaa
gtcaactctcaaatcaaatgcaacgttattaatgagagcgaagagtgtaaagtactagca
gaatctaatccagaggaagtagaaggtgtgatgttggatgcagaagatggtaaaggtgaa
attatctcctctgagcaagagaacaccaaaagtgaagtttttggaaaagtggtagtaaca
gaaaataatgaaacaagcgaagcacctgaagcagtcacagctgaaatactgaatggtgaa
aaagcttcaactgaagaattcaattcgagtattagtctttctgataataatattcctgta
aaacgtgatgctcaaggccagattcctgagcaggcagttggtgaagttagcagaggaagt
gataaaacaagtgatgaaacagaggagcatggaggcccctctggagaaacagataccagc
atggacacctgtgatgaacaggtgagcagtgatgtggacgctgaaactgagcctgtcagg
gaagctgaggacagggacatgactgtagcgacctcaaagactgaagaaactgaaataaac
aacgaaatgaatataggagctgacaggattgttcctggcacaccagcaatgaataccgaa
gaacaaaaggttgattctgaaaaaactgaagtaaataatgatcttgataagaaagtaaat
aatgaacttgaagaaacaaaattagaagacaggcaaattatagtaggagatgatatttta
ccagaagttcatgaaagttcaaataaaatggacgaatcattccagtccttgacatccgaa
acaatggtctctgacctgattagagaagataatggatctcctcaaaaaccaagggaatgc
gatcctttactcatgtcagtaaatgcaagtcccagttgcatgcagactcggtgtgtgtgg
tcacccttggcttctccatccactagtattttaaagaggggactaaaaagatcccaagag
gatgagaactcttcgcctgttaataagtttacgtgggcaatttttcaactggatggaatc
ttcacaattaacataagccataattttgttgttctctcatctttcctcagggcaagaggt
ctgggacaactcattagagccaagaatataaaaacaattggtgatttgagtactcttaca
gcttctgaaataaaaactcttcctatccgttctccaaaagtgtccaatgtgaaaaaggcc
cttagagtttatcatgagcaacagatgaaatctcatggacttgaagaaattccagttttt
gatatttctgacagaacagtaaatggcatagaaaataaatctgatgaagaaagacttgcg
tcagatttgatggatcctgttactttagaacctccattttctaaaaatctcatggcacag
atcagtgctcttgccctgcagttggattcagaagatctgcataattattcaggaagccaa
ctatttgaaatgcacgagaaacttggtagcatggcaaactgtataataaaaaatctgcag
tcacgttggaagtcaacaacccatgaaaattctgtttag
DBGET
integrated database retrieval system
