Ochotona princeps (American pika): 101522279
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Entry
101522279 CDS
T07609
Symbol
SS18
Name
(RefSeq) protein SSXT isoform X1
KO
K15623
protein SSXT
Organism
opi
Ochotona princeps (American pika)
Pathway
opi03082
ATP-dependent chromatin remodeling
opi05202
Transcriptional misregulation in cancer
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
101522279 (SS18)
09160 Human Diseases
09161 Cancer: overview
05202 Transcriptional misregulation in cancer
101522279 (SS18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
opi03036
]
101522279 (SS18)
Chromosome and associated proteins [BR:
opi03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
101522279 (SS18)
GBAF(ncBAF) complex
101522279 (SS18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SSXT
Motif
Other DBs
NCBI-GeneID:
101522279
NCBI-ProteinID:
XP_004579629
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All DBs
Position
9:complement(35892117..35952583)
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AA seq
418 aa
AA seq
DB search
MSVAFAAPRQRGKGEITPAAIQKMLDENNHLIQCIMDYQNKGKTSECSQYQQMLHTNLVY
LATIADSNQNMQSLLPAPPTQNMPMGPGGMNPSGPPPPPRSHNMPSDGMVGGGPPAPHMQ
NQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMT
MSQGQPMGNYGPRPNMNMQPNQGPMMHQQPPSQQFNMPQGGGQHYQGQQPPMGMMGQVNQ
GNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGY
QQPSYPEQGYDRPYEDSSQHYYDGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPG
QQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtggcgttcgcagccccgaggcaacgaggcaagggggagatcactcccgctgca
atccagaagatgttggatgaaaataaccatcttattcagtgtataatggactatcagaat
aaaggaaagacctcagagtgttctcagtatcagcagatgctgcatacaaacttggtgtac
ctcgctacaatagcagattctaatcaaaatatgcagtctctcttaccagcaccacccaca
cagaatatgcctatgggtcctggagggatgaatccgagcggccctcccccacctccacgc
tctcacaacatgccttcagatggaatggtaggtgggggtcctcctgcgccgcacatgcag
aaccagatgaacggccagatgcctgggcctaatcatatgcctatgcagggacccggacct
aatcaactgaatatgacaaacagttctatgaatatgccttcaagtagtcatggatccatg
ggcggttacaaccattccgtgccatcatcacagagcatgccagtgcagaatcagatgaca
atgagccaagggcagccaatgggaaactatggccccaggccaaacatgaatatgcagcca
aaccaaggtccaatgatgcatcagcaacctccttcccagcaattcaacatgccccaggga
ggagggcagcactaccaaggacagcagcctcctatgggaatgatgggccaagtgaaccaa
ggcaatcatatgatggggcagagacagattcctccttacagaccacctcagcagggccca
ccacagcagtactcaggccaggaggactattatggggaccagtacagtcatggtggacaa
ggtcctccagaaggcatgaaccagcaatattatcccgatggtcataatgattacggttat
cagcaaccgtcgtatcctgaacaaggctacgataggccttatgaggattcctcacaacat
tactacgacggaggaaattcacagtatggccagcagcaagatgcttaccaaggaccccct
ccacagcagggctacccgcctcagcagcagcagtacccgggacagcagggttatccaggg
cagcagcagggctatggtccttcccagggtggtcctggtcctcagtaccctaattaccca
caaggacaaggtcagcagtatgggggttacagaccaacacagcctgggccgccacagccc
ccccagcagaggccttacggatacgaccagggacagtatggaaattaccagcagtga
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