KEGG   Ochotona princeps (American pika): 101522348
Entry
101522348         CDS       T07609                                 
Symbol
RFC5
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
opi  Ochotona princeps (American pika)
Pathway
opi03030  DNA replication
opi03410  Base excision repair
opi03420  Nucleotide excision repair
opi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:opi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    101522348 (RFC5)
   03410 Base excision repair
    101522348 (RFC5)
   03420 Nucleotide excision repair
    101522348 (RFC5)
   03430 Mismatch repair
    101522348 (RFC5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:opi03032]
    101522348 (RFC5)
   03036 Chromosome and associated proteins [BR:opi03036]
    101522348 (RFC5)
   03400 DNA repair and recombination proteins [BR:opi03400]
    101522348 (RFC5)
DNA replication proteins [BR:opi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    101522348 (RFC5)
  DNA Replication Termination Factors
   ELG1-RFC complex
    101522348 (RFC5)
Chromosome and associated proteins [BR:opi03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    101522348 (RFC5)
DNA repair and recombination proteins [BR:opi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     101522348 (RFC5)
  Check point factors
   HRAD17(Rad24)-RFC complex
    101522348 (RFC5)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 AAA_24 RCF1-5-like_lid AAA_16 AAA_11 AAA_22 RuvB_N AAA_assoc_2 AAA_14 DEAD DUF815 ResIII AAA_5 AAA_19 TIP49 ATPase_2 AAA_30 PhoH TniB AAA_7 nSTAND3 Mg_chelatase IstB_IS21 Thioredoxin_6 NPHP3_N AAA_25 AAA_28 AAA_3
Other DBs
NCBI-GeneID: 101522348
NCBI-ProteinID: XP_004597838
LinkDB
Position
21:9909735..9918841
AA seq 340 aa
MDSSAGQQQEQPASAKIRNLPWVEKYRPQTLDDLISHRDILSTIQKFINEDRLPHLLLYG
PPGTGKTSTILACAKQLYRDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFK
LVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPE
LMVPRLEHVVEQEKVYVSEDGMKALITLSCGDMRRALNILQSTNMAFDKVTEETVYTCTG
HPLKSDIANILDWMLNQDFSTAYRNIMELKTVKGLALQDILTEIHLFVHRVDFPSSVRIH
LLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLIVSEA
NT seq 1023 nt   +upstreamnt  +downstreamnt
atggacagctcagccggacagcagcaggagcagcccgcgtcggccaagatccggaacctg
ccctgggttgaaaaataccggccccagaccctggatgatctcatttcgcatcgggacatt
ctgagtaccattcagaagtttatcaatgaagaccgcctgccgcatctgctcctctatggt
cccccagggaccgggaagacatccaccatcctagcctgtgccaagcagctctatagagac
aaagaattcggctccatggtcttagagctgaatgcttcagatgaccgagggattgatatt
gttcggggaccaatcctgagctttgccagcacaaggacaatatttaagaaaggctttaaa
ctggtgatcttggatgaagccgatgccatgacccaggatgcccagaatgccttgagaaga
gtgatcgagaaattcacagaaaataccagattttgcctcatctgtaactacctgtccaag
atcatccccgccttgcagtcccgatgcaccaggttccgctttggtcccctgacgccagaa
ctcatggttccccgcctggagcacgtggtggagcaggagaaggtttatgtaagcgaggat
gggatgaaagctcttataactctttcctgcggagacatgcggagagctctgaacattctg
cagagtaccaacatggccttcgacaaggtgaccgaggagaccgtctacacctgcacgggc
cacccgctcaagtccgacatcgccaacattctggactggatgttgaaccaggatttcagc
acagcctataggaacattatggagctgaaaaccgtgaaggggctggcactgcaggacatc
ctgacggagatccacttgtttgtgcacagagttgactttccatcatcggtccgaatacat
ctcttgaccaaaatggcagatattgagtacagactttctgttggcaccaacgagaagatt
cagctgagttctctcattgctgcttttcaagtcaccagggacctcattgtctcagaggcc
tag

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