Ochotona princeps (American pika): 101523419
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Entry
101523419 CDS
T07609
Symbol
NCBP1
Name
(RefSeq) nuclear cap-binding protein subunit 1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
opi
Ochotona princeps (American pika)
Pathway
opi03013
Nucleocytoplasmic transport
opi03015
mRNA surveillance pathway
opi03040
Spliceosome
opi05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101523419 (NCBP1)
09122 Translation
03013 Nucleocytoplasmic transport
101523419 (NCBP1)
03015 mRNA surveillance pathway
101523419 (NCBP1)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
101523419 (NCBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
opi03019
]
101523419 (NCBP1)
03041 Spliceosome [BR:
opi03041
]
101523419 (NCBP1)
Messenger RNA biogenesis [BR:
opi03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
101523419 (NCBP1)
Spliceosome [BR:
opi03041
]
Common components
Common spliceosomal components
Cap binding complex
101523419 (NCBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
MIF4G_like
MIF4G_like_2
PRP1_N
Motif
Other DBs
NCBI-GeneID:
101523419
NCBI-ProteinID:
XP_004581019
LinkDB
All DBs
Position
1A:complement(29543866..29578807)
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AA seq
568 aa
AA seq
DB search
MSRRRHSDENDGGQPHKRRKASDANETEDHLESLICKVGEKSACSLESNLEGLAGVLEAD
LPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANN
YNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEDDVPQVRRDWYVYAFLSSLPWV
GKELYEKKDSEMDRIFANTESYLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWAQIQKLK
KDRWQERHILRPYLAFDSILCEALQHNLPPFTPPPHTEDSTYPMPRVIFRMFDYTDDPEG
PVMPGSHSVERFVIEENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYHIVEVIFAELF
QLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHH
LSNFQFRWSWEDWSDCLTQDLESPKPKFVREVLEKCMRLSYHQRILDIVPPTFSALCPAN
PTCVYKYGDESSNSLPGHSVALCLAVAFKSKATNDEIFSILKDVPNPNQDDDDDEGFSFN
PLKIEVFVQTLLHLAAKSFSHSFSALAK
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcggcggcggcacagcgacgagaacgacggtggacaacctcacaaaaggagaaag
gcctctgatgcaaacgagactgaagatcatttggaatctttaatatgcaaagtaggagaa
aagagtgcctgctctttggagagcaatctggaaggtttggctggtgttttagaagctgat
cttcctaactacaagagcaagatcttaaggcttctttgtacagttgcacgtctgctgccg
gagaagttgaccatttatacaaccttggttggcctgctgaatgccaggaattacaacttc
ggtggagaatttgtagaagccatgatccgtcaactgaaagaatcgctgaaagcaaacaat
tataatgaagctgtgtatttggtgcgttttttgtctgatcttgtgaattgtcatgtgatc
gctgccccgtcaatggttgctatgtttgaaaattttgtaagcgtaactcaggaagatgat
gtgcctcaggtgcggcgggattggtatgtgtatgcgtttctgtcatctttgccttgggtt
ggaaaggagttgtacgaaaagaaggattcagagatggaccgcatctttgccaacactgaa
agctatcttaaaagacgccagaagactcatgtgcccatgttacaagtatggactgctgat
aaaccacatccacaagaagagtatttagattgcctgtgggcccagattcagaaattgaaa
aaggatcgctggcaggaacggcacatcctaagaccctatcttgcctttgacagcatcctg
tgtgaagcactgcagcacaacctgcctcctttcacaccacctccacacacggaggactcc
acgtaccccatgccaagggtcatcttcaggatgtttgattatacggatgaccccgagggt
cctgttatgccagggagtcattcggtggaaagatttgtaatagaagagaatcttcactgt
atcatcaagtcccattggaaggaaaggaagacttgtgctgcacagctagtgagctatcca
gggaagaacaagatccccttgaattaccacatagttgaggtgatctttgcagagctgttc
cagcttccagcaccccctcatattgatgtaatgtacacaacacttctcattgaactgtgc
aaacttcagcctggctctctgcctcaagttttggcacaagcaactgaaatgttatatatg
cgtttggacactatgaatactacatgtgtagacaggtttattaattggttttctcaccat
ctaagtaactttcagttccgttggagctgggaagattggtcagattgtcttacgcaagat
cttgaaagtcccaaaccaaagtttgtaagagaagttctagaaaaatgtatgaggttgtct
taccatcagcgtatattagatattgttcctcctaccttctcagctctatgtcctgcaaat
ccaacctgcgtttacaagtatggagatgaaagcagcaattctctgcctggacattctgtg
gccctctgtttggctgttgcctttaaaagtaaagcaaccaatgatgaaatatttagcatt
ctaaaagatgtaccaaaccccaaccaggatgatgatgatgatgaaggattcagttttaat
ccgttaaaaatagaagtgtttgtacagactctgctccacttggcagccaaatcattcagc
cactccttcagtgctcttgccaagtaa
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