Ochotona princeps (American pika): 101523649
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Entry
101523649 CDS
T07609
Symbol
TRPC4
Name
(RefSeq) short transient receptor potential channel 4 isoform X2
KO
K04967
transient receptor potential cation channel subfamily C member 4
Organism
opi
Ochotona princeps (American pika)
Pathway
opi04360
Axon guidance
opi04929
GnRH secretion
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09150 Organismal Systems
09152 Endocrine system
04929 GnRH secretion
101523649 (TRPC4)
09158 Development and regeneration
04360 Axon guidance
101523649 (TRPC4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
opi04040
]
101523649 (TRPC4)
Ion channels [BR:
opi04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
101523649 (TRPC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
Ank_2
Ank
Ank_4
Ank_3
PKD_channel
Motif
Other DBs
NCBI-GeneID:
101523649
NCBI-ProteinID:
XP_004577565
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All DBs
Position
8:complement(17355934..17525680)
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AA seq
972 aa
AA seq
DB search
MAQFYYKRNVNAPYRDRIPLRIVRAESELSPSEKAYLNAVEKGDYASVKKSLEEAEIYFK
ININCIDPLGRTALLIAIENENLELIELLLSFNVYVGDALLHAIRKEVVGAVELLLNHKK
PSGEKQVPPILLDKQFSEFTPDITPIILAAHTNNYEIIKLLVQKGVSVPRPHEVRCNCVE
CVSSSDVDSLRHSRSRLNIYKALASPSLIALSSEDPFLTAFQLSWELQELSKVENEFKSE
YEELSRQCKQFAKDLLDQTRSSRELEIILNYRDDNSLLEEQSGNDLARLKLAIKYRQKEF
VAQPNCQQLLASRWYDEFPGWRRRHWAVKMVTCFIIGLLFPVFSVCYLIAPKSPLGLFIR
KPFIKFICHTASYLTFLFLLLLASQHIDRSDLNRQGPPPTIVEWMILPWVLGFIWGEIKQ
MWDGGLQDYIHDWWNLMDFVMNSLYLATISLKIVAFVKYSALNPRESWDMWHPTLVAEAL
FAIANIFSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLNQLYFY
YEETKGLSCKGIRCEKQNNAFSTLFETLQSLFWSIFGLINLYVTNVKAQHEFTEFVGATM
FGTYNVISLVVLLNMLIAMMNNSYQLIADHADIEWKFARTKLWMSYFEEGGTLPTPFNVI
PSPKSLWYLVKWIWTHLCKKKMRRKPESFGTIGRRAADNLRRHHQYQEVMRNLVKRYVAA
MIRDAKTEEGLTEENFKELKQDISSFRFEVLGLLRGSKLSTIQSANAAKEPSNSAEPEEK
SDNEGNSKDKKRNLSLFDLTTLIHPRSAAIASERHNISNGSALVVQEPPREKQRRVNFVT
DIKNFGLFHRRSKQNTNQIFSVSEEIARQQAAGPLEGTIQLESRGLVSRGDLNIPGLSEQ
CVLVDHRERNTDTLGLQVGKRACSFESDKVVVEDTVPIIPKEKHSKEEDSSIDYDLSLTD
TVAHEDYVTTRL
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggctcagttctactacaaaagaaatgttaatgccccgtacagagaccgcatccctctg
aggatagtaagagcagaatcagaactttccccatcagaaaaggcctatttgaatgcagtg
gaaaaaggagattatgcaagtgtcaagaaatcacttgaggaagctgaaatctatttcaaa
atcaatataaattgcattgatcctcttggaagaactgcccttctcattgccattgaaaac
gagaatttggagctcattgagctgctgttaagcttcaatgtctatgttggagatgcgctg
ctacacgctatcagaaaagaagttgtcggcgctgtggagctgttactgaaccacaaaaag
ccaagtggagaaaaacaggtgcctcccatactgcttgataagcaattctctgaattcaca
ccggacattacaccaattatcttggcagcccatacaaataattatgagataataaaactc
ttggttcagaaaggagtctcggtcccccgaccccatgaggttcgctgtaactgtgtggaa
tgtgtgtccagctcggacgtggacagcctccgtcactcacgttccagactcaacatctac
aaggccttggccagtccgtctctcattgcgctgtcaagtgaagatccttttctcacagcc
tttcagctgagttgggaactccaagaactgagcaaggtagagaatgaattcaaatcagag
tatgaggaactgtcacgacagtgcaaacaatttgctaaggacctcctggatcagacaaga
agttccagggaactggagataattcttaattaccgagatgacaatagtttgttagaagaa
caaagtggaaacgatcttgcaagactaaaattggctattaagtaccgtcaaaaagagttt
gttgcccaacccaattgtcaacaactcctggcatctcgctggtatgatgaattcccaggc
tggaggagaagacattgggcggtgaagatggtgacgtgtttcataataggacttcttttc
cctgtcttctctgtgtgctacctgatagctcctaaaagcccactgggactgttcatcaga
aagccatttatcaagtttatctgccacacagcctcctatttgacttttttgttccttctg
ctgcttgcctctcagcacatcgacaggtcagacttgaacaggcaaggtccaccaccaacc
atcgtcgagtggatgatattaccatgggtcctgggctttatatggggagaaattaaacag
atgtgggatggtggacttcaagattacatccatgattggtggaatctgatggattttgtg
atgaattctttatacttagctaccatctccttgaaaattgttgcatttgtaaagtacagt
gctctaaatccacgagaatcttgggacatgtggcatcccacgcttgtggcagaggcttta
tttgctattgcaaacatcttcagttccttacgtctgatctcactatttactgcaaattct
cacctgggacctctgcaaatatctctgggaagaatgctcctggacattttgaagtttctg
ttcatatactgcctggtgttgctagcatttgcaaatggcctaaatcaattgtacttctat
tatgaagaaacaaaagggttaagctgcaaaggcatacgatgtgaaaagcagaataatgca
ttttcaacgttatttgagacacttcaatccctcttttggtcaatatttgggctcatcaat
ttgtatgtgaccaatgtcaaagcacagcatgaattcactgagtttgttggtgccaccatg
tttgggacatataatgtcatctctttggttgtcctactcaacatgttgatagctatgatg
aataattcttaccaacttattgctgaccatgcagatatagagtggaaatttgctcgaaca
aagctttggatgagctactttgaagaaggaggaactctccctactcccttcaatgtcatc
ccgagccctaagtccctctggtacctcgtcaagtggatatggactcatctgtgcaagaaa
aagatgagaagaaagccagaaagttttggaaccatagggaggagagctgctgacaatctg
agaagacatcaccaatatcaagaagttatgaggaacctggtgaagcgatacgttgctgca
atgattagggatgctaaaactgaagaaggcctgactgaagagaactttaaggaactcaag
caggacatttctagtttccgctttgaagttcttggtttgcttagaggaagcaagctttcc
accatccaatctgcaaatgctgcaaaggagccatccaactcggctgagccggaggaaaag
agtgataacgaaggtaatagcaaagacaagaaaaggaacctcagcctttttgatttaacc
accctgattcatccaagatcagcagcaattgcctctgaaagacataacataagcaatggc
tctgccctggtggtgcaagagccaccaagggagaagcagaggagagtgaattttgtgacc
gatatcaaaaacttcgggttgtttcacagacggtcaaagcaaaacacaaaccaaatcttc
tctgtttcagaagaaattgctcggcaacaggcggcaggaccacttgagggaactatccaa
ctggaatcccgaggattagtttcacggggtgatctgaacattcctggtctcagtgaacag
tgtgtcttagtagatcatagagaaaggaacacggacacgctgggtctacaggtaggcaag
agagcgtgttcgttcgagtcagacaaggtggtggtggaggacactgtgcccattatacca
aaggagaaacactccaaggaggaggattctagtatagactatgatttaagcctcaccgac
acagtcgcccatgaagattatgtgacaacgagactgtga
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