Ochotona princeps (American pika): 101523691
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Entry
101523691 CDS
T07609
Symbol
NDC1
Name
(RefSeq) nucleoporin NDC1 isoform X1
KO
K14315
nucleoporin NDC1
Organism
opi
Ochotona princeps (American pika)
Pathway
opi03013
Nucleocytoplasmic transport
opi05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101523691 (NDC1)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
101523691 (NDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
opi03019
]
101523691 (NDC1)
Messenger RNA biogenesis [BR:
opi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
101523691 (NDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
DUF2649
Motif
Other DBs
NCBI-GeneID:
101523691
NCBI-ProteinID:
XP_004588745
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Position
13:complement(43804882..43859586)
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AA seq
674 aa
AA seq
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MVTTMSGPLTGGPRDILWRVLGWRVVCSIIWSVLLLPACTAAFVLFSSADLLHPVQWLSD
SLSDLYSSCIIFYLLLLSVVIIIISIFNVEFYAVVPAIPCSRLALIGKIVHPQQLLHSFV
HAALGMVVAWCAAMITRSQHSFLVVPCTGTESLGHPAAQTCLNEYHLFFLLAGAFMGYSY
SLLYFVNNMNYLPFPIIQQYKFLRFRRSLLLLLKHSCVESLFLTRNFCIVYYFLGHIPKA
WISTAMDLHIDERSHRPLDTVSGLLNPSLLYHVWLCGVFLLMTWYISWMLFKIYATEAHV
FPVQLPFAEESDECLPKVLNSNPPLIIKYLALQDLMLLSQYSPSRRQEVFSLSQPGGHPH
NWTAISRECLNLLNDMTQKLILFQEVAATNGRVSSSYAVEPKKSISAEETAFQTPKSGQK
PRPSVPSLVKTSLFSSKLPPPDVASPIGSAFGSSVVDRMAGILDVNTCYGSPQSPRLVRR
GPRLWTSAADEQMMEFPNPSPYTPVRAEGKTASEPSVIYSWIQNKREQIKNFLSKRVLIM
YFFSKHPETSIQAVFSDAQMHIWALEGLSHLVAASFTEDRFGVVQTTLPAILNTLLTLQE
AVDKYFKLPHASSKPSRIPGSLVDTSYKTLRFAFRASLKTAIYRITTTFGDNLNAVQASA
EHQRRLQQFLEFKE
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggtcacgaccatgagtgggcccctgaccggcgggccgcgggacatcctgtggcgcgtt
ctgggctggagggtggtgtgcagcatcatctggtccgtgctgctgctccccgcctgcacc
gctgcgtttgtgctcttcagcagcgctgacttactccaccctgtgcagtggctgtcggat
tctctcagtgacctgtatagttcctgtatcatcttttacctcttgctgctgtcagtggta
ataataataataagcattttcaatgtggagttctatgcagttgtgcctgccattccctgc
tccaggctggccctgattgggaagatcgttcaccctcagcagctcctgcattccttcgtc
cacgctgccctggggatggttgtggcgtggtgtgctgccatgatcaccaggagccagcac
agcttccttgtggttccctgcactggcactgagagcttaggtcatcctgctgcgcagacg
tgcttaaatgaatatcatcttttcttcctgctggctggagcgtttatgggctacagctat
agcctcctgtactttgttaacaacatgaactaccttccatttcctatcatacagcagtac
aagtttctgcgcttcaggagatctctgctgttactacttaaacatagttgtgtggagtca
ctgttcctgactagaaatttctgcattgtatattattttcttggtcatattcctaaagcc
tggattagtactgctatggaccttcatatagatgagcggtcccataggcctcttgacact
gtgagtggcctcttgaatccctcactgctctaccatgtttggctctgtggagtcttcctg
ctgatgacttggtatatctcctggatgcttttcaaaatctatgccactgaggcacatgtg
ttccctgtgcagctcccatttgcagaagagtcagacgaatgcctgccgaaggtcttgaac
agcaatcctcccctcatcatcaagtatttagccttgcaagacctgatgttgctttctcag
tattctccttcacgaagacaagaagtttttagccttagccagccaggtggacatccccat
aactggacagctatttcaagagagtgtttgaaccttttaaatgatatgactcagaaactg
attctgtttcaagaggttgctgctacgaatgggagagtgtcttcatcttacgcagtagaa
cccaagaagtcgatttctgcagaagaaactgccttccagacaccaaaatcaggccagaag
cctcggccttcggtgccatcgttggttaaaacgtcgctgttttcttcaaagctgcctcca
cctgatgttgccagtcccattgggagtgcatttggctccagtgtggtggatcgcatggcg
gggattttggatgtgaacacatgctatgggtccccgcagagccctcggctggtcaggagg
ggtccccgactgtggacctcagcagctgatgagcaaatgatggaatttcctaatccttct
ccctataccccagttcgagctgagggtaagacagcgagtgagcccagcgtgatttattca
tggattcagaataaacgtgaacagattaagaatttcttatctaaacgggtgctgataatg
tattttttcagtaagcacccagagacctccattcaggcagtattttcagatgcccaaatg
cacatttgggccttagaaggtctgtctcaccttgtggcagcatcatttacggaagacaga
tttggagtcgtccagactacactaccagccatcctgaatactttgctgacgctgcaggag
gcagtggacaagtacttcaagcttcctcatgcttccagcaaaccatcccgaattccagga
agtcttgtggacacttcctataagacattaaggtttgccttcagagcatccctcaaaact
gccatctatcgaataaccactacatttggcgacaatctgaatgctgtgcaagcatctgca
gaacatcagagaagacttcaacagttcttggagttcaaagaatag
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