Ochotona princeps (American pika): 101523700
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Entry
101523700 CDS
T07609
Symbol
POLR2B
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2 isoform X1
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
opi
Ochotona princeps (American pika)
Pathway
opi03020
RNA polymerase
opi03420
Nucleotide excision repair
opi05016
Huntington disease
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
101523700 (POLR2B)
09124 Replication and repair
03420 Nucleotide excision repair
101523700 (POLR2B)
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
101523700 (POLR2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
opi03021
]
101523700 (POLR2B)
03400 DNA repair and recombination proteins [BR:
opi03400
]
101523700 (POLR2B)
Enzymes [BR:
opi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
101523700 (POLR2B)
Transcription machinery [BR:
opi03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
101523700 (POLR2B)
DNA repair and recombination proteins [BR:
opi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
101523700 (POLR2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
101523700
NCBI-ProteinID:
XP_004590920
LinkDB
All DBs
Position
15:complement(82730113..82763938)
Genome browser
AA seq
1167 aa
AA seq
DB search
MQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDL
QAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVD
ITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFII
NGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGA
KKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDE
AFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGY
MVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGK
DFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNS
PIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEE
WSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDI
REREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDT
LEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSA
MGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTG
YNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDK
LDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQV
MVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIII
NPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEV
LYNGFTGRKITSQIFVGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFG
EMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQIS
LVRMPYACKLLFQELMSMSIAPRMMSV
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgcaatatgacgaggatgacgacgaaatcactccggatttgtggcaggaagcgtgctgg
attgtcatcagttcctattttgatgagaaaggtctggtcagacaacagctggattctttt
gacgagtttattcagatgtctgttcagagaatcgtggaagacgctcctcccatagatctc
caagcagaggctcagcacgccagcggggaggtggaagagccgccgagatacttgctgaag
tttgagcagatttacctctccaagcctacccattgggaaagagacggtgctccctcgccc
atgatgccaaacgaagctaggttaaggaacctcacgtattctgcaccactttatgttgac
ataacaaagacagtcatcaaagaaggcgaggagcaacttcagactcagcaccagaaaacc
ttcataggaaagattcccattatgctgcggtcaacgtactgcctgctgaacggcctgacg
gatcgtgatctttgtgagctcaacgagtgccccttggaccctggtggctatttcattatt
aatgggtcagaaaaggttttgattgctcaagaaaaaatggcaacaaacacagtgtatgta
tttgccaaaaaagattctaaatacgcctacacaggggagtgtcggtcttgtctggagaat
tcttcccgacctacaagcaccatctgggtgagcatgctggccagaggaggacagggagca
aagaagagcgccatcgggcagcgcatagtggcgacgctgccgtacatcaagcaggaggtc
cccatcatcatcgtcttcagagccctgggcttcgtgtcggacagagacatcctagagcat
atcatttatgattttgaagatccagagatgatggaaatggtgaaaccttccctggatgaa
gcgtttgtcatccaggaacagaatgttgcattaaatttcattggctcgagaggggcgaag
cctggtgtgactaaggagaagagaattaaatacgcaaaagaagtcttgcagaaggaaatg
ctcccccacgttggtgtcagtgatttttgtgagaccaaaaaagcctatttcctggggtac
atggtccacaggttgctgctggccgctctgggcaggagggagctggacgacagagatcac
tatgggaacaagaggctggacctcgcggggccgctgcttgccttcttgtttcgagggatg
tttaagaatttgcttaaagaagtccgaatctatgcacagaaatttattgatcgagggaag
gattttaatttggagttggcaattaaaacacggattatatctgatggcttgaaatactct
ctggctactgggaactggggtgatcagaagaaagcgcatcaagccagagctggagtgtct
caggtgttaaaccgactgacgtttgcatctactctctcccacctgcgtcggttaaattct
cctatcggcagagatggcaaactggcaaaaccaagacagctgcacaacacgctgtggggc
atggtgtgtccagctgagaccccggagggccacgctgtggggctggtgaagaatctggcg
ctgatggcttacatttcagttggctcacagccttctccaattctggaatttttggaagaa
tggagtatggaaaatttggaggaaatttctcctgcagctattgctgacgcaaccaagatt
tttgtgaacggctgctgggttggaatccacaaggatcctgagcagctcatgaacacctta
cggaaactgcggcggcagatggacatcatcgtgtcggaggtttctatgatcagagacatt
cgggagagggagattcgtatctacacggacgcaggccggatctgtagaccactgctcatt
gtggaaaaacagaagctgcttttgaagaagagacatattgaccagttgaaagagagagaa
tataacaactacagttggcaggacttggtggccagcggggtcgtggagtacattgacacg
ctggaggaggaaacagtgatgctcgccatgacgccggacgatctgcaggagaaggaagtc
gcatactgctccacgtacacgcactgtgagatccacccgtccatgatccttggcgtctgc
gcgtctatcatccctttccccgatcataaccagtcccctagaaacacataccagtctgct
atggggaagcaagccatgggggtttatatcaccaacttccacgttcgaatggacactttg
gcccatgtcctctattatccgcaaaagccacttgtgactacacgctccatggagtacctg
cggttccgagaactgccagcaggtatcaactcgattgtggccatcgcctcctacaccgga
tataaccaggaagactccgtgatcatgaaccgttccgctgtggaccgaggctttttcagg
tctgttttctatcgctcatacaaagaacaggagtctaaaaaaggatttgatcaggaagaa
gttttcgagaaacctacccgtgaaacgtgccaaggcatgaggcatgccatttatgacaag
ctggacgatgatggtttgatagctcccggcgtccgtgtgtccggggacgatgttattata
ggcaagacggtcaccttgcccgaaaacgaggacgagctggagagtaccaatcgccgctac
accaagagagactgcagcaccttcctcaggaccagcgagacgggcattgtggaccaggtc
atggtcacgctcaaccaggaaggatacaagttttgcaaaataagggtgcgctctgtcagg
attccgcagattggagataagttcgctagtcgccatggccaaaagggaacttgtgggatt
cagtacaggcaagaggacatgcctttcacctgtgaaggcatcacccccgacatcatcatc
aatccgcatgccatcccctcgcgcatgaccatcggccacttgatcgagtgtctgcagggg
aaggtgtcggccaacaagggggagataggtgacgccacgccatttaacgatgctgttaac
gtgcagaagatctccaacctcttatcagattacggctaccatctcagaggaaatgaggtc
ctgtacaacgggttcaccggtcggaaaatcacgtcgcagatcttcgtcggccccacttac
taccagcgcctgaagcacatggtggatgacaagatccactcgcgggccagaggccccatc
cagatccttaacaggcagcccatggagggccgctctcgtgacggcggcctgcgctttgga
gaaatggagcgggactgtcagattgcccacggggctgcacagtttctacgggaaaggctc
ttcgaggcatctgatccctatcaggttcatgtctgcaatctgtgtggcatcatggccatt
gccaacaccaggacccacacatatgaatgcagaggctgccgcaataaaacgcagatttcc
ttggtgcggatgccgtacgcgtgcaagctgctgttccaggaactcatgtccatgagcatc
gccccacggatgatgagtgtgtag
DBGET
integrated database retrieval system
