Ochotona princeps (American pika): 101524055
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Entry
101524055 CDS
T07609
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1
KO
K12828
splicing factor 3B subunit 1
Organism
opi
Ochotona princeps (American pika)
Pathway
opi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101524055 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
opi03041
]
101524055 (SF3B1)
03036 Chromosome and associated proteins [BR:
opi03036
]
101524055 (SF3B1)
Spliceosome [BR:
opi03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
101524055 (SF3B1)
Complex B
101524055 (SF3B1)
Complex C
U2 SnRNP specific factors
101524055 (SF3B1)
Chromosome and associated proteins [BR:
opi03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
101524055 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
TOR1L1_N
HEAT_EZ
HEAT_ECM29
HEAT_EF3_N
Htt_N-HEAT_1
Adaptin_N
UNC45-central
DUF2298
TALPID3
Motif
Other DBs
NCBI-GeneID:
101524055
NCBI-ProteinID:
XP_004577337
LinkDB
All DBs
Position
7:complement(80237977..80278897)
Genome browser
AA seq
1246 aa
AA seq
DB search
MRREHAQLFFSVAAAASGSSRERQFRLCVGVDKMAKIAKTHEDIEAQIREIQGKKAALDE
AQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAATELEDDDDDYSSSTSLLGQKKPGYHAP
VALLNDIPQSTEQYDPFAEHRPPKIADREDEYKKHRRTMIISPERLDPFADGGKTPDPKM
NARTYMDVMREQHLTKEEREIRQQLAEKAKAGELKVVNGAAASQPPSKRKRRWDQTADQT
PGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGSETPGATPGSKIWDPTPSHTPAGAAT
PGRGDTPGHATPGHGGATSSARKNRWDETPKTERDTPGHGSGWAETPRTDRGGESIGETP
TPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTPAMNMATPTPGHIMSMTPEQLQAWR
WEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVPIRTPARKLTATPTPLGGMTGFHMQ
TEDRTMKNVNDQPSGNLPFLKPDDIQYFDKLLVDVDESTLSPEEQKERKIMKLLLKIKNG
TPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLV
RPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNT
TARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLV
EIIEHGLVDEQQKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFL
KAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIK
TEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKM
VMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKP
YLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYP
EVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGA
EYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGDLVHRQTASAVVQHMSLG
VYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPA
RKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atgcgcagagagcacgcccagctatttttctccgtggcggcggcagcgagcggaagttct
cgggagcgccagttccgtctgtgtgttggagtggacaaaatggcgaagatcgccaagact
cacgaagatattgaagcacagattcgagaaattcaaggcaagaaggcagctcttgatgaa
gctcaaggagtgggccttgattctacaggttattatgatcaggaaatttacggtggaagt
gacagcagatttgctggatacgtgacatcaattgctgcaactgaacttgaagatgatgac
gatgactactcatcatctaccagtttgcttggtcagaagaagccaggatatcatgcccca
gtggcactgcttaatgatataccacagtcaacggaacagtatgatccatttgctgagcac
cgacctccgaagattgcagaccgggaggacgaatacaaaaagcacaggcggaccatgata
atttccccagagcgtcttgatccttttgcagatggagggaagacccctgatcctaaaatg
aatgctaggacttacatggatgtaatgcgagaacaacatttgactaaagaagagagagaa
attaggcaacaactagcagaaaaagctaaagctggagaactaaaagtcgtcaatggagca
gcagcatcccagcctccctcaaaacgaaagcggcgttgggatcaaacagcagatcagacc
cctggtgctacccctaaaaaactttcaagctgggatcaggctgagaccccagggcatacc
ccttccttacgatgggatgagacaccaggacgtgcaaagggaagtgagactcctggggca
acaccaggctcaaaaatatgggatcctacacccagtcacacaccagcaggggctgctact
cctggacgaggcgataccccgggtcatgccacaccaggccatggaggtgcaacttccagt
gctcgtaaaaacagatgggatgaaacccctaaaacagaaagagatactcctgggcatgga
agtggttgggctgagacgccgcgaacagatcgaggtggagagtctattggtgaaacgcca
actcctggagccagcaaaagaaagtcacgttgggatgaaacaccagctagtcagatgggt
ggaagcactcctgttctaacccctgggaaaacaccaattggcacaccagccatgaatatg
gcaactcctaccccaggtcacatcatgagtatgactcctgaacagcttcaggcttggcga
tgggagagggagattgatgagcgaaatcgcccactttctgatgaagaattggatgctatg
ttcccagaaggatataaggtacttccccctccagctggttatgttcctattcgaactccg
gctcgaaagctgacagcaactccaacaccattgggtggtatgactggtttccacatgcaa
actgaagacagaactatgaaaaatgttaatgaccagccatctggaaatcttccattttta
aaacctgatgatattcaatactttgataaactattggttgatgttgatgagtcaacactt
agcccagaagaacaaaaagagagaaaaataatgaagttgcttttaaaaattaagaatgga
acccctccaatgagaaaggctgccttgcgtcagatcactgataaagcacgagagtttggg
gctggtcctttgtttaatcagattcttcctctgctgatgtctcctacacttgaggatcaa
gagcgtcatttacttgtgaaggttatcgacagaattttgtacaaacttgatgacctagtt
cgaccatatgtgcacaagatcctcgtggtcattgaaccattattgattgatgaagattac
tatgctagagtggaaggccgagagattatttctaatttggcgaaggctgctggtctggct
accatgatctctaccatgagacctgatatagataacatggatgaatatgtccgtaacaca
acagctagagcatttgctgttgtagcctctgctctgggcattccttctttattgcctttc
ttaaaagctgtatgtaaaagcaagaagtcctggcaagcgagacacaccggtattaagatt
gtgcagcagatagctattcttatgggctgtgctatcttgccacatctcagaagtttagtt
gaaatcattgaacatggtcttgtggatgagcaacagaaagtacgaaccatcagtgctttg
gccattgctgccttagctgaggcagcaactccttatggtattgaatcttttgactccgtt
ttaaagcctctgtggaagggtattcgccaacacagaggaaaaggtttggccgctttctta
aaagctattggatatcttattcctctcatggatgcagaatatgccaactactatactaga
gaagtgatgttaattcttattcgagaattccagtctcctgatgaagagatgaagaaaatt
gtgctgaaagtggtgaaacagtgttgtggaacagatggtgtagaagcaaactacattaag
acagagatccttcctcctttttttaaacacttctggcagcacagaatggctttggataga
agaaattaccgacagttggttgatactactgtggaattggcaaacaaagtaggtgctgct
gaaatcatatctaggattgtggatgatctgaaagatgaagctgaacagtacagaaaaatg
gtgatggagacaattgagaaaatcatgggcaacttgggagcagcagatattgatcacaaa
ctagaagaacaactgattgatggtattctttatgctttccaagaacagaccacagaggat
tcagtgatgttgaatggatttggtacagtagtcaatgctcttggcaaacgagtcaaaccg
tacttgcctcagatctgtggtacagttttgtggcgtttaaataacaaatcagccaaggtt
aggcagcaggcagctgacttgatttctaggactgctgttgttatgaagacttgtcaagag
gaaaaattgatggggcatttgggtgttgttttgtatgagtatttgggtgaagagtaccct
gaagtattgggcagcattcttggagcgctgaaggccattgtaaatgtaataggtatgcat
aagatgaccccaccaattaaagatttgctgcctagactcacccccatcttaaagaacagg
catgaaaaagtacaggagaattgtattgatcttgttgggcgtattgctgacaggggagct
gagtatgtatctgcaagagaatggatgaggatttgctttgagcttttagagctcttaaaa
gctcacaaaaaagctattcgtagagcaacagtcaacacatttggttatattgcaaaggct
attggggaccttgtgcacaggcagacagctagtgcagtggtacagcacatgtcacttgga
gtttatggatttggttgtgaagattcactgaaccacttgttgaactatgtgtggcccaat
gtgtttgagacttctcctcacgtgattcaggcagttatgggggctctggagggtctaaga
gttgctattggcccatgtagaatgttgcagtattgtttacagggtctgtttcacccagcc
cggaaagtcagagatgtgtattggaaaatttacaactccatctacattggttcacaggat
gctctcatagcacattatccaagaatctacaatgatgataagaacacttacattcgttat
gaacttgactatatcttataa
DBGET
integrated database retrieval system
