Ochotona princeps (American pika): 101524216
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Entry
101524216 CDS
T07609
Symbol
CNOT6
Name
(RefSeq) CCR4-NOT transcription complex subunit 6 isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
opi
Ochotona princeps (American pika)
Pathway
opi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101524216 (CNOT6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
opi03019
]
101524216 (CNOT6)
Enzymes [BR:
opi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
101524216 (CNOT6)
Messenger RNA biogenesis [BR:
opi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101524216 (CNOT6)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
101524216 (CNOT6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_14
LRR_4
LRR_1
LRR_R13L1-DRL21
LRR_LRWD1
Motif
Other DBs
NCBI-GeneID:
101524216
NCBI-ProteinID:
XP_004599078
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All DBs
Position
3:complement(1766195..1829144)
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AA seq
557 aa
AA seq
DB search
MPKEKYEPPDPRRMYTIMSSEEAANGKKSHWAELEISGKVRSLSSSLWSLTHLKALHLSD
NSLSRIPSDIAKLHNLVYLDLSSNKIRSLPAELGNMVSLRELHLNNNLLRVLPFELGKLF
QLQTLGLKGNPLTQAILNLYQEPDGTRRLLNYLLDNLSGTAKRISTEQPPPRSWIMLQEP
DRTRPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQE
VETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTV
EFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLELRKELIEMSSGKAHLGTEKQLILVANA
HMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRSLRASVLGEFGTIPLVLCADLNSLPDSG
VVEYLSTGGVETNHKDFKELRYNESLTNFSCNGKNGTTNGRITHGFKLKSAYESGLMPYT
NYTFDFKGIIDYIFYSKPQLNTLGILGPLDHHWLAKNNISGCPHPLIPSDHFSLFAQLEL
LLPFLPPVNGVHLPGRR
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaagaaaaatacgagccccctgaccctcggaggatgtacacaattatgtcctct
gaggaagcagcaaatggaaagaaatcacattgggcagagcttgaaataagtggaaaagta
agaagtttaagttcatctttgtggtcactaactcacttgaaagctttgcatctaagtgac
aattccctgtcccgcattccttcagacattgccaagcttcacaacctggtgtatctggac
ctgtcctccaataaaatccgcagtttaccggcagaactcggaaacatggtgtcactcagg
gagctccatttaaataacaacctgttacgagttctaccttttgagctgggaaagctgttt
caattgcagactttaggcctgaaaggaaatccactcacccaggctatcttgaacctctat
caggaacctgatggaacaagaaggctgctgaactatttgcttgataatttgtcaggtact
gcaaaaagaatttcaacagaacagccacctccaagatcttggattatgttacaagaacca
gacagaacaagaccaactgccttgttttctgtcatgtgctataatgttctttgtgataaa
tatgcgacccggcagttatacggctattgtccatcatgggcactaaattgggactacagg
aagaaggccattattcaagaaatcctgagctgcaatgctgatatcataagccttcaagag
gttgaaacggaacagtattacagtttttttctggtagaactgaaagaacgtggttataat
gggttctttagtcctaagtctcgagctaggacaatgtcagaacaagaaagaaaacatgtt
gatggctgtgcaatattcttcaagacagaaaaatttactttggttcagaaacacactgtt
gaatttaatcagctagcaatggcaaattcagaagggtctgaagctatgctgaacagagtc
atgacaaaagataatattggcgttgcagtactactagaacttcgaaaggaattgattgaa
atgtcatctggaaaggcacatcttggaacagagaaacaactcattctggtggcgaatgcg
catatgcactgggatcccgagtactcggatgtgaagctggtgcaaaccatgatgttcctc
tccgaagtgaagaacattattgataaagcctctcgaagcctcagagcgagtgtattggga
gaatttggaactattccacttgtgctatgtgcagacctgaactctttgccagactctggt
gttgtagagtatttgagcactggtggagtagaaacaaatcataaagactttaaggaacta
cgatacaatgaaagtcttacgaacttcagctgtaatgggaagaacggaacaacgaatgga
cgaatcactcacggtttcaagttaaagagtgcctatgaaagtggcctgatgccttacaca
aattacacatttgatttcaagggtataattgactacatcttttattcaaaacctcagttg
aacacgctaggcatcctgggacctctggaccatcactggttagctaagaacaacatcagc
ggctgcccacaccctctgatcccctctgaccacttctcactttttgcacaactggagctc
ctgctgcctttcctgccccccgtgaatggcgtgcacctccctggcaggaggtag
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