Ochotona princeps (American pika): 101524932
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Entry
101524932 CDS
T07609
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
opi
Ochotona princeps (American pika)
Pathway
opi03030
DNA replication
opi03410
Base excision repair
opi03420
Nucleotide excision repair
opi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
101524932 (RFC1)
03410 Base excision repair
101524932 (RFC1)
03420 Nucleotide excision repair
101524932 (RFC1)
03430 Mismatch repair
101524932 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
opi03032
]
101524932 (RFC1)
03400 DNA repair and recombination proteins [BR:
opi03400
]
101524932 (RFC1)
DNA replication proteins [BR:
opi03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
101524932 (RFC1)
DNA repair and recombination proteins [BR:
opi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
101524932 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
BRCT
AAA
PTCB-BRCT
RuvB_N
BRCT_2
AAA_14
AAA_22
AAA_5
Rad17
AAA_16
AAA_7
AAA_33
AAA_18
AAA_17
nSTAND3
Zeta_toxin
DUF4783
AAA_30
NTPase_1
RNA_helicase
NPHP3_N
TIP49
AAA_19
AAA_28
Motif
Other DBs
NCBI-GeneID:
101524932
NCBI-ProteinID:
XP_036352830
LinkDB
All DBs
Position
2A:complement(23785762..23879144)
Genome browser
AA seq
1098 aa
AA seq
DB search
MEMEPQVVQQKSQDIRKFFGVIPSGKKQVNETGKKNEKTKSTEESLKTKKGKREIKVSFP
NEDDDFVCKKAGSKSKENGRATHSYLGSSNLKKNEENAKTKNKPLSPIKLTPTSVLDYFG
TGSVQRSDKKMVASKKKEPSQNTDDSRLNDEAIARQLQLDEDAELERQLHEDEEFARTLA
MLDEEPRVKKVQKDTDEGEMFSSVQTNLSKAEKHNHPQKEQFSDGRNSCSPKKQTKCGGP
EEALRPPKSAALRAEVSSSPKASAKLSAMKMREQSCSKETQPLASKRKENAVEVKGETKT
PKKAKSSPAKKESLSPEDSEKKRTNYQAYRSYLNREGPKALGSKEIPKGADNCLEGLTFV
ITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDED
GLLDLIRNMPGKKSKYEIAVEAEMKREKSKLERTPRKNSQGKRKSSPTRKESESKKSRLT
PQKGSSLESPSKEAEETSVLHRSLDFQEQVAEELPEDSSTGTGADGSREGKLDHLLWVDK
YKPTSLRTIIGQQGDQSCANKLLRWLRNWHKSSPEEKKNAKFGKFAGKDDGSSFKAALLS
GPPGVGKTTTASLVCQELGYSYVELNASDTRSKNSLKAIVAESLNNTSIKGFYSSGASPS
GSTKHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDL
RFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTY
DQAKADSHRAKKDIKLGPFDVARKVFAAGEETAHMSLADKSDLFFHDYSIAPLFVQENYV
HVKPVAAGGDMKKHLMLLSRAADSICDGDLVDSQIRSKQNWNLLPTQAIYASVLPGELMR
GYMTQFPTFPSWLGKYSSTGKHDRIVQDLALHMSLRTYSSKRTVNMDYLSHLRDALVQPL
ISQGVEGVQDVVALMDAYYLMKEDFESIMEIGSWGGKPSSFSKLDPKVKAAFTRAYNKEA
HLTPYSLQAVRASRHSLGASLDSEYSEDVPEEDSQFDEKDQDAIETDAMIKKKTKSAKSS
KPEKDKESRKGKGKNSRK
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atggagatggagcctcaggtcgtgcagcagaagtctcaggacatccggaaattctttgga
gttataccaagtgggaagaaacaagtaaatgagacgggaaagaagaatgagaaaaccaag
tccactgaggaatcgttgaaaacaaagaaaggaaaaagggaaatcaaggttagttttccg
aatgaagatgatgactttgtgtgtaagaaggcaggctccaagtctaaagagaatggaaga
gctacacacagttaccttgggtcatccaacctgaaaaagaatgaagagaacgccaagacc
aaaaacaagcctctgtcgcccatcaagctgactcccacatcagtgcttgattattttggg
actggaagtgtccagagatcagataagaagatggtggcgagcaaaaaaaaagaaccttca
caaaacacagatgattccagattaaatgatgaagccattgccaggcaattgcaactcgat
gaagatgcggagctggagaggcaattgcacgaagatgaagaatttgccagaacgttagcc
atgttggatgaagaacccagagtcaaaaaggttcaaaaggacacagacgagggagaaatg
ttttcatctgttcagaccaatttaagtaaagcagaaaaacataaccatcctcagaaagaa
caattttcagatggaagaaacagctgcagtcctaagaagcagacaaagtgcggtgggcca
gaggaagccctgcggcctcccaagtccgcagccctccgagcagaggtgtcctcttccccg
aaggccagtgctaagctgtccgcgatgaaaatgagagagcagagttgcagtaaggaaaca
cagcctctggcctcaaaaagaaaagagaatgctgttgaagtgaaaggagagaccaaaact
cctaagaaagccaaaagttctccagctaagaaagagtctttaagtcctgaagattctgaa
aagaaacgcactaactatcaagcttatcgaagctacttaaatcgggaaggtcccaaagcc
ctgggctccaaggagatccccaagggagctgacaattgcttggaagggctgacgtttgta
atcacaggagtgctggagtccattgaacgggatgaagccaaatctctgattgagcgttac
ggagggaaagtgacaggaaacgtcagcaagaaaaccaactacctcgtcatgggtcgtgac
agcgggcagtccaagagcgacaaggcagcagccttagggacaaaaattattgatgaagat
ggcctattggatctgattcgaaatatgccagggaagaagtccaagtatgaaatagcagtt
gaagctgagatgaagagagaaaagtccaaattggagagaacacctcgaaaaaatagccaa
gggaaaagaaaaagcagtccaactcggaaggagtcagaatccaagaagagcaggctgact
ccccagaagggcagctctctggaatcacccagcaaggaagcagaggaaacaagtgtgttg
catagaagcctggacttccaggagcaggtggctgaggagctccccgaggacagcagcacc
gggactggggccgacggcagtcgggaaggcaaactggatcatttgctctgggtcgataag
tataagccaacctcactcaggaccataatcgggcagcaaggtgaccagagctgtgccaac
aaactcctccgctggctccgaaactggcacaagagttctcctgaagagaaaaaaaatgca
aagtttggtaaatttgctggtaaagatgatggctccagttttaaagcagcgttgctctca
ggcccccctggtgttggcaaaaccaccacagcttctctggtgtgtcaggaattgggatat
agctacgtggagctaaatgcaagtgacactcgaagtaagaacagtctgaaggcgattgtt
gccgagtccctgaacaacactagcatcaagggcttttattccagtggagcatccccttcc
ggaagcacaaaacatgctctcatcatggacgaagtggacggcatggcgggcaatgaggac
cggggcggaattcaggaattaattggcctgataaaacacactaaaattcccatcatttgt
atgtgcaacgatagaaatcatcccaagattcgctctctggttcattattgttttgatctt
cgttttcaaagacctcgagttgaacaaattaagggtgctatgatgtctattgcatttaaa
gaaggcttaaagatcccccctccggctatgaatgaaataattttaggagccaatcaggat
atcagacaggttttgcacaatctgagtatgtggtgtgcacgaagtaaggccctcacctac
gaccaggccaaggctgattctcatagggccaaaaaagatattaaactgggcccgtttgat
gttgcccggaaagtgtttgcagccggagaggagactgcacacatgtcactagcggacaaa
tccgatctctttttccatgattattccattgcccccctctttgtccaggagaattatgta
catgtgaagcctgtagctgcagggggagacatgaaaaagcacttgatgctgttaagccgg
gcagctgatagcatatgcgacggggacttggtggacagtcagatccggagcaaacagaac
tggaaccttctgcccacacaggctatttatgccagtgttcttcctggagaattgatgaga
gggtacatgactcagtttcccacctttccaagctggctgggcaaatactcatctacaggc
aagcatgatcgcatcgttcaggacctggccctgcatatgagtctcagaacttattccagc
aagaggactgtaaacatggattacctgtcacacctacgggatgcacttgtacagcccttg
atctcacaaggggtagaaggggtccaggatgttgttgcacttatggacgcgtattacttg
atgaaggaagactttgagagcatcatggaaatcggcagctggggtggcaaacccagttcc
ttttccaaattggatcccaaggtgaaagctgccttcacgagagcatacaataaggaggcc
cacctcactccatactcccttcaggccgtcagggcttcgcgccacagcctgggcgcatcc
ctggattccgagtacagcgaggacgtgcctgaagaggactcccagttcgatgagaaggac
caagatgccatagaaacggatgcgatgatcaagaaaaaaacaaaatctgcaaagtcttca
aaaccagaaaaagataaggaatccagaaaaggaaaaggaaaaaattcaaggaaatga
DBGET
integrated database retrieval system
